Shewanella aestuarii: HBH39_12550
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Entry
HBH39_12550 CDS
T06921
Name
(GenBank) OmpA family protein
KO
K03286
OmpA-OmpF porin, OOP family
Organism
saes
Shewanella aestuarii
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
saes02000
]
HBH39_12550
Transporters [BR:
saes02000
]
Other transporters
Pores ion channels [TC:
1
]
HBH39_12550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OmpA_membrane
OmpA
OMP_b-brl
TSP_3
Porin_4
Opacity
OprF
Phenol_MetA_deg
DUF2490
Motif
Other DBs
NCBI-ProteinID:
QIR15212
UniProt:
A0A6G9QL63
LinkDB
All DBs
Position
PN3F2:2859744..2860847
Genome browser
AA seq
367 aa
AA seq
DB search
MMKNTLKVVLLTSMLPLAANAAEELTPWYIGAGLGVNNYEPNCDQKTMKICHDDSPYAWD
VLAGYLFNDYFGIELGYRALGRAQWVDYSNKLNDVGADGMTLGLVGFYPFANKWSFSAEA
GAMSYIISNKKQWNTEYYSDNGIAPFIGAGIGYNFTDNLKLQAKYRRYENLDEDKWKTLE
LDSNYWGLELSYRFGSNKPTAAAVAPVVAPVDSDNDGVNDDVDQCPATPSTHRVDANGCT
IYEAITEQSDVGGILFDNDSSVIKSASYSDIEKLANYMKKNPEFTVVIEGHASNVGTPDY
NMDLSERRAQAVAEVLTSKYGIESSRVKAVGYGVTKPIVEGNTPEAHKQNRRIEAIVTKT
EKRAVLK
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaacactttaaaagtagtattactcacctcaatgttacctcttgcagcaaat
gccgcagaagaattaacaccttggtacattggtgcaggtttaggtgtaaataattacgaa
cctaattgcgaccaaaaaacaatgaaaatttgtcacgacgactctccatatgcttgggat
gtactagcaggatatttattcaatgattactttggtatagaactcggttaccgtgctcta
gggcgcgctcaatgggtagattactccaataaattaaatgatgtcggcgctgatggaatg
acattaggtttagtgggcttttacccatttgccaataagtggtcattctcagcagaagct
ggtgcaatgagctatatcatttcaaacaaaaagcagtggaatacagaatattatagcgat
aatggtattgcgccgttcattggtgctggtatcggttataattttactgataaccttaag
cttcaggcaaaatatcgtcgttatgagaatttagatgaagataagtggaaaacacttgaa
ttagacagtaactattggggacttgaacttagctaccgttttggatcaaacaaaccaact
gctgcagcggttgcacctgtagttgcacctgtagactctgataatgacggcgtaaatgat
gatgttgatcaatgtccagcaacgccaagcacccatagagtagatgctaatggttgtacc
atttacgaagccatcactgaacaaagtgatgtaggtggtattttatttgataacgattct
tctgtgattaagtcagcttcttattctgatatagaaaaactagctaactacatgaagaaa
aatcctgagtttactgttgttatcgaaggtcatgcttctaatgtcggtacaccagattac
aacatggatctatcagagcgtcgtgctcaagctgtagctgaagtattaacatcaaaatat
ggaatagaatctagccgtgttaaagctgtaggttacggtgtgactaaaccaatcgttgaa
ggtaatacaccagaagctcataagcaaaaccgtcgtattgaagcgatagtaacaaagaca
gaaaaacgagctgtgctaaaataa
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