Shewanella aestuarii: HBH39_12780
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Entry
HBH39_12780 CDS
T06921
Symbol
rppH
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
saes
Shewanella aestuarii
Pathway
saes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBH39_12780 (rppH)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saes03019
]
HBH39_12780 (rppH)
Messenger RNA biogenesis [BR:
saes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HBH39_12780 (rppH)
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GFIT
Motif
Pfam:
NUDIX
Nudt16-like
NUDIX_4
Motif
Other DBs
NCBI-ProteinID:
QIR15251
UniProt:
A0A6G9QN51
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Position
PN3F2:complement(2905808..2906329)
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AA seq
173 aa
AA seq
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MIDSDGFRANVGIIICNKFGQVMWARRFGQHSWQFPQGGLDDGETAEQAMYRELYEEVGL
RPEHVQILTTSRSWLRYRLPKRLIRQESKPVCIGQKQKWYLLQLKGHDNTINLNSSGHPE
FDDWRWVSYWYPVRQVVSFKRDVYRKVMKEFAATTLALQTREPHNKKRGRNRS
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
gtgattgatagcgacggctttcgcgcaaatgtgggcatcattatctgtaataagtttggt
caagtaatgtgggcaagacgatttggtcaacattcttggcaatttccacaaggtgggctt
gatgatggcgaaactgctgagcaagctatgtatcgtgaattgtacgaagaagtcggctta
aggcctgaacatgttcaaattttaacaacttcgcggtcatggttacgttatcgtttacct
aaacgtctgattcgtcaagaaagtaagcctgtgtgtatcggccaaaaacagaaatggtat
ttgctacaacttaaaggtcatgacaatacaattaatttaaactcatcaggtcatcctgag
tttgatgattggcgttgggtaagctattggtatcctgttcggcaggtggtgtcatttaag
cgtgatgtatatcgaaaagtaatgaaagaatttgcagccacgacactagccttgcaaaca
cgagagccgcataacaaaaaaagaggtcgtaatcgcagttaa
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