Shewanella aestuarii: HBH39_17060
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Entry
HBH39_17060 CDS
T06921
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
saes
Shewanella aestuarii
Pathway
saes03030
DNA replication
saes03410
Base excision repair
saes03420
Nucleotide excision repair
saes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBH39_17060 (polA)
03410 Base excision repair
HBH39_17060 (polA)
03420 Nucleotide excision repair
HBH39_17060 (polA)
03440 Homologous recombination
HBH39_17060 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saes03032
]
HBH39_17060 (polA)
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_17060 (polA)
Enzymes [BR:
saes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HBH39_17060 (polA)
DNA replication proteins [BR:
saes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HBH39_17060 (polA)
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HBH39_17060 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBH39_17060 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QIR15970
UniProt:
A0A6G9QMZ6
LinkDB
All DBs
Position
PN3F2:3925760..3928516
Genome browser
AA seq
918 aa
AA seq
DB search
MPTVANNPLILVDGSSYLYRAFYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAV
VFDAKSKTFRNDMYSEYKAQRPPMPDDLRSQIAPLHRIIKALGLPLISIEGVEADDVIGT
IARQASKEGRATLISTGDKDMAQLVDEHVTLINTMTDTIMGPDEVKAKFGVGPELIIDFL
ALMGDKADNIPGLPGVGEKTALAMLTGVGSVEKLLADPQAVVDVGFRGAKTMPAKIKDNA
EMLKLSYELATIKTDVELEGTWQDLLIKPQDRDELIACYGEMEFKRWLAEVLDNKAPKSA
AQVQSDEVIEAPETIEVQYETILSEAQLDDWINTLSNAELIAIDTETTSLNYMDAKLVGI
SFAVEAGKAAYLPLAHDYLDAPQQLDMTKALEKLRPILEGNKPEKVGQNLKYDISIFANV
GITLQGVRFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIEL
ETAAPYAAEDADITLRLHQHLWPRLEKEAELASVFNELELPLIQVLSHIERQGVYIDSML
LSQQSDELAQKLDLLEQKAYEIAGEKFNLASPKQLQVLFFEKLGYPIIKKTPKGAPSTAE
EVLIELALDYPLPKIILEHRSLAKLKSTYTDKLPLMVNSTTGRVHTSYHQANAATGRLSS
SDPNLQNIPIRTEEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGK
DIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQTYIDTY
FARYPGVLKYMEDTRADAAEQGYVSTLFGRRLYLPEIKDRNAMRRQAAERAAINAPMQGT
AADIIKKAMISVAQWIKQDTQGEITMIMQVHDELVFEVDADKAEQLKVKVCQLMADAAKL
DVTLLAEAGIGDNWDQAH
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcctacagttgccaataatccgctcatcctggtcgatggatcatcttatctttaccga
gcattttatgctcctccccatttaaccaattcaaaaggtgaagcaaccggtgcagtttat
ggtgtcgtcaacatgttgcgcagcttattgagccgctatcagcctagtcatatcgctgtt
gtgtttgatgccaaaagcaaaacatttcgtaatgatatgtacagcgagtataaagcccag
cgtccccctatgcctgatgatttacgcagtcaaatcgcgcctttgcatcgtattattaaa
gccttaggtttaccgcttatcagtatcgaaggcgttgaggctgatgatgtgattggcact
attgctcgccaagccagtaaagagggtcgcgccaccttaatcagtacgggtgataaagat
atggcccaactcgttgatgagcacgtcacacttatcaataccatgacagataccattatg
gggcctgatgaagttaaagctaaatttggtgtggggcctgaactgatcatcgacttctta
gcattaatgggtgataaagccgataacattcctggtttacctggtgtaggggaaaaaaca
gcgttggccatgctaacaggagtgggcagtgttgaaaaattactggccgatccacaagcc
gtggttgacgtcggctttaggggcgctaaaaccatgcccgctaaaattaaagataatgcc
gagatgctcaagctatcttacgagctagcaaccattaaaaccgatgttgaacttgaagga
acttggcaagatctgcttattaaacctcaagatagggatgaactaattgcctgttatggt
gaaatggaatttaaacgctggttggctgaagtattagataacaaagcaccaaaatcagcg
gcacaagttcaatcagatgaagtaatagaagctcctgaaacgattgaagtacaatacgag
acaattttatctgaagcgcaattagatgactggatcaacaccctatctaatgctgagctg
atcgcaattgacaccgaaactaccagcctcaattatatggatgctaagttagtgggtatt
tcatttgctgttgaggcgggaaaagccgcatatttaccgttagcccatgattatcttgat
gctccgcagcagcttgatatgactaaagctttagaaaagctgcgtccgatccttgaaggt
aacaaaccagaaaaagtgggccaaaatcttaaatacgatatcagtatttttgctaacgta
ggcataacgcttcaaggtgttcgctttgatactatgctcgagtcttacgtgtttaactca
gtagcttcacgtcatgatatggatggtttggccctgaaatatttaggccataaaaacatc
agctttgaagagattgctggcaaaggtgcaaaacaacttacctttaaccaaatcgaactt
gaaaccgctgcgccttatgccgctgaagacgctgatatcaccctgcgattgcatcaacat
ttatggccaaggcttgaaaaagaagctgagcttgcaagtgtatttaatgaattagaatta
ccgttaatccaagtgttatcgcatatcgaacgtcaaggtgtgtacattgattctatgctg
cttagtcagcaaagcgatgaattagcacaaaagctcgatttactcgaacaaaaagcttac
gagattgccggtgaaaaatttaacctagcttcacctaagcagctacaagtcttgtttttt
gaaaagctcggttacccgatcatcaaaaaaacccctaaaggcgctccatcaacggctgaa
gaagtattaattgaattagcacttgattacccgctgccaaaaattattcttgaacatcgt
agtctagctaaactaaaaagtacttataccgataaactgcccttaatggttaactcaacc
acaggtcgagttcacactagctaccatcaagccaatgcggcaaccggacgcttatcatca
agcgatccaaacttacaaaacatccccattcgaactgaagaaggacgtcgtattcgccaa
gcctttatcgcaccagaaggacgcaaaattctggcagccgattactcgcaaattgaactg
aggatcatggcgcatttatctcaggataagggattgctcaccgcctttgctgaaggtaaa
gacatccataaagctaccgcagctgaagtatttggtgtccattttgaagaagtcaccaca
gaacaacgccgccgagcaaaagccgttaactttggccttatttatggtatgtcggctttt
ggcttggcaaaacaactcgatataccacgcaacgaagcgcaaacctatattgatacctat
ttcgctcgctatcctggcgtactgaaatacatggaagacactcgcgcagatgccgctgag
caaggctatgtatcaacattatttggccgccgactatatttacctgaaataaaagaccgt
aacgcaatgcgtcgacaagctgctgagcgcgccgcaattaacgcaccgatgcaaggcacg
gctgctgatattatcaaaaaagctatgatatccgtggcacaatggataaagcaggacact
caaggcgaaatcaccatgatcatgcaagttcacgatgagcttgtttttgaagtcgatgca
gacaaagccgaacagttaaaagtaaaagtgtgtcaattaatggcagatgccgcaaaacta
gatgtgacactattggctgaagctggcattggtgataactgggatcaagctcattaa
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