Shewanella aestuarii: HBH39_19170
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Entry
HBH39_19170 CDS
T06921
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
saes
Shewanella aestuarii
Pathway
saes03420
Nucleotide excision repair
saes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HBH39_19170
03430 Mismatch repair
HBH39_19170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_19170
Enzymes [BR:
saes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HBH39_19170
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBH39_19170
MMR (mismatch excision repair)
Other MMR factors
HBH39_19170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_11
Spo0M
Motif
Other DBs
NCBI-ProteinID:
QIR16598
UniProt:
A0A6G9QQA1
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All DBs
Position
pPN3F2_2:complement(115593..118067)
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AA seq
824 aa
AA seq
DB search
MINEVLGRLNKQQLEVATTTSGIIRTIAGPGTGKTGTQTAHIANLINQGVPPEAILAITF
TNKAASETRHRIVKNTQDLGNVGWQVAASTYHSFCRKFVLKPFQNHEIFYEMGYLNGFII
LDDTDSESVMKDVYANSVGGFSLVLDALAINEKQMLQHISNYRANGIDYNEFSQSIKHDV
IKMAAAKEVKSIIDAYPKSLKDVSKDNREQMVKEVGLKLQSIKGDFTDCVVAIAWKQYAK
ACAEADGLDFDDQLLFTMKLLKEDPNVAARLAKRFQYIFLDEFQDANLCQWELVKSIIEQ
QANPAVFIVGDDRQSIYRFRHADVDIMKNLEHEFPGCITNSLIYNYRSTGAIIDLSNALS
RDMPNQIGDGQLIAASKVQGEKPSLEIYKTALDEANGVVADIQALIAKGENPSDIAVLYR
NRSVNKEIIEALNKARMDYEIIGDVGFYQTAEIKSAVATLRILTRNNDVFAYAKVLDYAT
VGISPVRLKTTTHENGCTPLAAIAMIMEKDKRAKNKAEGFVTDLQNLIKTSSQIISKDKF
LSMVLNTPELKLHYDTNPAIREKASVHYQEYNAHSVNKLVTEFKQFWESYLLPSFVKDSK
KVAEKKSANTDGSVDDIANELVEKRATNFNVILERISADLLKPDAVLSELVDDLVQRIDQ
DGDEQLDSIQLLTNHASKGLEFQHVFLIGTEEESYNSLESDVEDIEEEGRNFFVALTRAE
KTLHISASETRVVNGNFTNRSLLKLLYPLLDKLNISENTLSILNGPDARFEDEFQVDPTP
TNEGIAKEMQRIGDKFKQRHVDKQPTPDIEDETEADFNPSPGFY
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgattaacgaggttcttggtcgtttgaataagcagcaactcgaagttgctaccaccact
agcggtattattcgcactattgctggtcctggtactggaaaaactggtacccagacagct
cacatagccaatctcattaatcaaggtgttcctcccgaagctatccttgctattaccttt
actaacaaagcagcgagtgaaacaagacatcgtattgtaaaaaacacacaggacttgggc
aacgttggctggcaagttgcggcatcaacgtaccattcgttttgccgtaaattcgtatta
aaacctttccaaaatcatgaaatattttatgaaatgggctacctaaacgggtttatcatt
ctcgatgatacggatagcgagtctgtaatgaaggatgtgtatgccaacagtgtgggcggt
tttagccttgtgttagatgcattggccattaatgaaaaacaaatgctgcaacatatttct
aattacagagctaatggcatcgattacaacgagttttcacagtcgattaaacatgatgtg
ataaaaatggcagcggctaaagaggttaaatcaatcatcgacgcttaccccaagtccctc
aaggatgtctcaaaagataaccgtgagcaaatggtgaaagaagtcggcctgaaacttcag
tcgattaaaggcgatttcaccgattgcgtagtggcaatcgcatggaaacagtatgctaag
gcctgtgcagaggcagatggcttggattttgatgatcaattgctgtttacgatgaagttg
ctcaaagaagaccccaatgttgcagctcgattagctaaacgctttcaatatatttttttg
gacgagtttcaggatgcgaacctttgccaatgggagttagtgaaaagcatcattgagcag
caagctaacccagccgtatttattgtgggtgatgatcgccaatctatttatcgttttcgt
cacgccgatgttgatatcatgaaaaaccttgagcatgaatttcccggttgtataacaaac
tcattgatttacaactaccgctctaccggcgctattattgatctgtcaaatgcattaagt
cgtgatatgcccaaccaaattggtgacggtcagcttattgccgcatcgaaagttcaaggt
gaaaagccatcattagaaatttataaaaccgcattagatgaggccaacggtgtcgttgca
gatattcaagcgctcattgcaaaaggggagaatccatctgatattgcagtgctttatcgt
aatcgttctgttaacaaagaaattatcgaagcgttgaataaagctcgtatggattatgag
ataatcggtgatgttggtttctatcaaactgctgagattaaatccgctgttgcaacattg
cggatcttgactcgtaacaacgatgtgtttgcctacgccaaggtattggattacgcaacc
gttgggatttcaccggttcggctgaaaaccacaacacatgaaaacggctgcacaccgctt
gctgcgattgccatgatcatggaaaaagacaaaagagccaaaaacaaggctgaaggcttt
gttactgatcttcaaaatctcatcaaaacatccagtcagatcattagtaaggataaattc
ttatcgatggtactcaatacgccagaactgaagcttcattatgatacaaacccagccatt
cgcgaaaaggcttcagtgcattatcaagagtacaatgcccattcagttaacaaactggtg
accgaatttaagcagttctgggagtcgtatctactgccttccttcgtcaaagacagtaaa
aaggtggcagaaaagaaatccgctaataccgacggttcagttgatgatattgccaatgag
ctcgttgaaaaaagagcgactaactttaacgttattttggaacggatcagtgctgacctg
cttaaacctgatgcagtgctgtcggagctggtggacgatttagttcagcgtatcgatcaa
gacggtgatgaacagctcgactccattcaattgctcacaaatcatgcttccaaaggtctt
gagtttcagcatgtttttctcattgggactgaagaagagtcgtataactcacttgaatca
gatgtggaagacatagaagaagagggtagaaattttttcgtcgcactgacgcgagctgaa
aagacactccatatctcagcatcagaaacacgggtagtgaacgggaacttcacaaatcgc
tctctcttaaagttactttaccccttgctcgacaaattaaacatctcagaaaacacattg
agcatattgaatggaccggacgcacgatttgaagatgagtttcaagtagacccgacgccc
actaacgaagggattgcaaaggaaatgcagcgtattggcgataaattcaagcagagacat
gtcgataagcagccgacaccagatatcgaggatgagacagaagcagactttaacccgtca
cctggtttttattaa
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