Simiduia agarivorans: M5M_02060
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Entry
M5M_02060 CDS
T02281
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
saga
Simiduia agarivorans
Pathway
saga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5M_02060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saga03019
]
M5M_02060
03009 Ribosome biogenesis [BR:
saga03009
]
M5M_02060
Enzymes [BR:
saga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M5M_02060
Messenger RNA biogenesis [BR:
saga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M5M_02060
Ribosome biogenesis [BR:
saga03009
]
Prokaryotic type
rRNA helicases
M5M_02060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Transketolase_C
AAA_22
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AFU97631
UniProt:
K4KF97
LinkDB
All DBs
Position
complement(467556..469394)
Genome browser
AA seq
612 aa
AA seq
DB search
MYMSLPTSFAELALTPAILKAVAELGYEQPSPIQAQAIPLLLEGHDILGVAQTGTGKTAA
FALPLLTRVNPAIQAPQVLVLAPTRELAIQVAEAFQRYACHMPGFHVLPLYGGQDMRAQL
RQLQRGAQVIVGTPGRVMDHLRRESLVLNQLQAIVLDEADEMLRMGFIDDVEWILEHTPK
QRQTALFSATMPPPIKKVADSYLNAPKEVKISPESSTGSNIEQRYQMVSGHHKLDALTRI
LEVEDFDAMIIFVRTKTATVELAEKLEARGFSAAAINGDMAQNLRERTIDRLKRGSLDIL
VATDVAARGIDVERVSHVMNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLFA
IERATQQKIEMMELPTGDTVTRHRIDHFKKQLADTLAEKREELEFFYDLLAEFSVSQDVS
AEEIASALAYLCQKDRPLQVELPDIPKFQERGNKGDRDNRRPRDERSERSERGDRPRGRR
PEPDVPMERFKLQVGKEHGVRPGDIVGAIANEANIDSKYIGNIKLFDGFSTVELPAGMPP
ETLNHMRNKVFIRGQAIRMAPDEGPAYHDERPARGKRPPRDRDAGGYKDKPQGKRRGNDD
APRPRKRKPKGE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtacatgtccctacccaccagttttgccgagctcgcgctcacccctgccattctgaaa
gccgttgccgaactcggctatgaacaaccctcacctattcaggcacaagccatccccctt
ctgctggaaggccacgatatcctgggtgtagcccagaccggcaccggaaaaaccgccgcc
tttgccctgcccttgctgacccgcgtcaacccggccatccaggccccccaggtgctggtg
ctcgcgcccacacgcgaactggcgattcaggtggccgaggcgttccaacgctatgcctgc
cacatgcccggattccatgttctgccgctttacggcggtcaggatatgcgtgcccaactg
cgccaattgcagcgtggcgcacaagtcatcgtgggcacccctggccgggtgatggaccac
ttgcgccgtgaaagcctggtactgaatcagctgcaggccatcgtactcgatgaagcagat
gaaatgttgcgcatggggtttattgacgacgtcgagtggattctcgagcacacgccaaaa
cagcggcagactgcgctgttttcagccaccatgccgccgcccatcaaaaaagtcgctgac
agctacctgaatgcgcccaaagaagtaaagatttctccggaaagctccaccggcagcaac
attgagcagcgttaccagatggtcagcgggcaccacaaactggatgcattgacccgcatt
ctggaggtggaagactttgatgcgatgatcattttcgtgcgcaccaagaccgccaccgtg
gaactggccgaaaaactcgaagcccgtggtttttctgcggccgcgattaacggcgacatg
gcccagaatctgcgagaacgcaccatcgaccgactcaagcgcggcagcctggatatcctg
gtcgccaccgacgtggccgcacgcggtatcgacgtcgaacgcgtcagccacgtgatgaac
tacgacattccttacgatagtgaagcctacgtgcaccgcattggccgcaccggccgcgcc
ggccggagcggtaaggcgattttgtttgtcgcaccgagagaaaagcgactgctgtttgcg
atcgagcgcgccactcagcagaaaattgaaatgatggagttgcccacgggcgataccgtc
acccggcaccgcatcgatcatttcaaaaagcaattagccgacacactggccgaaaaacgc
gaagagctggaatttttctacgacctgctggccgagttcagtgtcagtcaggatgtgtca
gcagaagaaatcgcgtccgcgctggcctatctttgccagaaagaccgcccgctccaggtt
gaactgccggatattcccaagtttcaggaacgtggcaacaaaggtgaccgcgacaatcgc
cgcccgcgcgacgagcgcagcgagcgtagcgaacgcggtgatcgcccgcgcggccgtcga
ccagaacccgatgtcccgatggaacgcttcaaattgcaggtgggcaaagagcatggcgtt
cgccccggcgacatcgtcggtgccatcgccaacgaagccaatatcgacagcaaatacatc
ggcaacattaaactgtttgacgggttttcaacggtagagctgccagcgggtatgccgccg
gaaacgctgaaccacatgcgcaataaagtctttatacgcggccaggcaattcgcatggcg
ccggacgaagggcccgcgtatcatgatgagcgacctgcacgtggcaaacgcccaccacgg
gatcgtgacgccggcggctacaaagataagccgcagggaaaacgccgcggtaacgacgat
gcacctcgtccgcgcaagcgcaaaccgaaaggcgaatag
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