Simiduia agarivorans: M5M_03695
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Entry
M5M_03695 CDS
T02281
Symbol
rnaseE
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
saga
Simiduia agarivorans
Pathway
saga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5M_03695 (rnaseE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saga03019
]
M5M_03695 (rnaseE)
03009 Ribosome biogenesis [BR:
saga03009
]
M5M_03695 (rnaseE)
Enzymes [BR:
saga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M5M_03695 (rnaseE)
Messenger RNA biogenesis [BR:
saga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M5M_03695 (rnaseE)
Ribosome biogenesis [BR:
saga03009
]
Prokaryotic type
rRNA processing factors
M5M_03695 (rnaseE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFU97948
UniProt:
H8YHY9
LinkDB
All DBs
Position
806997..809801
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AA seq
934 aa
AA seq
DB search
MLINATQPEELRVALVDGQWLYDLDIENRNREQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEISREYFGKSPKELDGRAKIKDLLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERAELRDAINGLNVPQGMGIIVRTAGIGRSSEELQW
DLDWLVQLWGNLSDAASGNKAPAFLFQESNVIIRAIRDYLRQDVGEVIVDTREAYDLVST
FINQVMPNYHSKIKLYEDDIPLFNRYQVESQIETAFEREVKLPSGGSIVIDPTEALVSID
INSSRATKGGDIEETALQTNLEAATEIARQLRLRDIGGLAVIDFIDMQNAKNQREVENRI
REALEMDRARVQVGRISKFGLLEMSRQRLRPSLEETMSKVCPRCSGQGTIRSTKSLALSI
LRLVEEEAQKERSAEIRAIVPVNVATYLLNEKRKTISKIEARNNIRVTVVPKSELQTPHF
EVQRLRDDDEGTFETSYKIHTPAEKTETDNDMQPAKPLPQAAVQLVAPSQPAPAPAPKPG
LIAQWIAAIIALFTPKPKPKKTKARDNDRRRQGRGRNTNNRRRGRNKGDQETENKNDNKT
DAKSDKPRNNRNDDSDGNQDEQRGRRRRRRRRNNDNDNAESNNQESNNQEQSVAANENEA
DDNNGNSEDKPQRRPSSRRGRNQERRRGRRSDQVEQFEQQSDDEISSESTASTESPVRET
QENSEPQENRRRNRRTPKQEKPDNGESNDTAEPKSETASTEERKPEPATREVSPEAEVVQ
TTPAEPVAAIDAAETEPAAKAPLTGEAEAKEVIETQPQATQTAAATEPDTQQSAEQTDGD
ARVESADDNTVVQQDEVDAAETVEATPEAQPASYSRATNDPRANPKPVSSVQITTETRPK
SGARPLNTALPAAVERTPRDLSRPANDPRNKRQA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcaacgcaactcaacccgaagagttgcgcgtcgcgctcgtagacggccaatgg
ctgtacgatctcgacatcgaaaaccgcaatcgcgaacagaaaaaagccaatatctacaaa
ggaaaaattacccggatcgagcccagcctcgaagcggcatttgtggactatggtgctgaa
cgtcacggttttttacccctgaaggaaatatcccgtgaatactttggcaaatcacccaaa
gagctcgacggccgcgcaaagatcaaagatctgctgaaagaaggccaggaagtcattgtc
caggtcgacaaggaagaacgcggcaacaaaggcgccgcactcactacctttattagtctg
gccggccgctatctggtattgatgccaaacaacccgcgcgccggtggcatctcgcgccgc
attgaaggcgaagaacgcgctgaactgcgcgatgcgatcaatggtctgaacgtgccccag
ggcatgggcatcatcgtccgcacggcgggcatcggccgtagctccgaagaattgcagtgg
gacctggactggctggttcaactgtggggcaacctgtcagacgctgcatccggcaataag
gcacccgccttcctgttccaggaaagtaatgtcatcatccgcgccattcgcgactacctg
cgtcaggacgtgggcgaagttatcgtggatacacgcgaagcctatgacctggtcagcact
ttcatcaaccaggtaatgcccaactatcacagcaaaatcaagctgtatgaagacgacatt
ccgttgttcaaccgctatcaggttgaaagccagatcgaaaccgcgtttgagcgcgaagtg
aaactgccttcgggcggctccattgtgattgaccccacagaagccctggtttctatcgac
atcaactcctcgcgcgccaccaaaggcggcgacatcgaggaaaccgcgctgcaaaccaac
ctggaagcagcgacggaaatcgcccgtcaattaaggttgcgcgatatcggtggtctggct
gttatcgactttatcgatatgcaaaatgccaagaaccagcgcgaggtggaaaaccgcatt
cgcgaagcactggaaatggatcgcgcccgtgtccaggtgggccgcatttcaaaatttggc
ctgctggaaatgtcccgccagcgcctgcgcccatccctggaagaaacaatgtccaaggta
tgcccgcgctgctctggccaaggcacgatccgctccaccaaatcactggcgctgtcaatt
ttgcgcctggtggaagaagaagcgcaaaaagagcgcagcgcagaaatccgcgccattgtt
ccggtcaatgttgccacctacttgctgaacgaaaaacgcaaaaccatcagcaaaatcgaa
gcgcgcaacaacattcgcgtaactgttgtgccgaaatcggagttgcaaacaccgcacttc
gaagtccagcgtctgcgcgatgacgacgaaggcacgttcgagaccagttacaagatccat
accccggcggaaaaaaccgaaaccgataacgacatgcaaccggccaagcccctgccacaa
gcagcggtacaattggttgcgccgtctcaaccagcaccggccccggcgcctaaacccggc
ctgattgcccagtggattgcggccatcatcgccctgtttacacccaagccaaaacccaaa
aagaccaaagcccgggataacgaccgtcgtcgccagggccgtggccgcaacaccaacaat
cgccgtcgcggtcgtaacaaaggcgaccaagagaccgaaaacaaaaacgacaataaaacc
gacgccaagtccgacaagccacgcaacaatcgcaacgacgatagcgacggcaatcaggat
gaacagcgcggtcgccgtcgtcgtcgtcgccgtcgtaacaacgacaatgacaacgcagag
agcaacaatcaggagagcaacaaccaggaacaatcggtcgctgccaacgaaaacgaagct
gacgacaacaacggcaactcggaagacaagccgcagcgtcgccccagctcccgtcgtgga
cgcaatcaggagcgccgtcgtggccgccgctcggatcaggtggagcaatttgagcagcaa
tccgatgatgaaatttcgtcggagtctaccgccagcaccgagtcgcctgtaagagaaacg
caggagaatagcgagccacaggaaaatcgccgccgcaatcgtcgaacgcctaaacaggaa
aaacctgacaacggcgaaagcaacgacacggcagagccgaaatctgaaaccgcatcaaca
gaagaacgcaagcctgaaccggcaacccgcgaagtatcacctgaagcggaagtagtgcag
actacgccagcagagccggtcgccgcgatcgacgcagcagagaccgaacctgccgccaag
gcccctcttaccggggaagctgaagcaaaagaagtgatcgaaacacagccgcaggcaacg
caaaccgccgctgctaccgaaccggacactcagcaatccgccgagcaaaccgacggtgac
gccagggtggaatctgcagatgacaacactgtcgtccaacaggacgaggttgacgcagca
gagactgttgaagcaaccccggaagcgcaacctgcaagttatagccgtgcaactaatgat
ccgcgcgctaacccaaaaccggtaagcagcgtgcagatcaccaccgagacacgccccaaa
tccggtgcccgaccgctcaacacggcgctgcctgctgcagttgaacgcacaccacgcgac
ttgagccgcccggccaacgatccgcgtaacaaacgccaggcttaa
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