Simiduia agarivorans: M5M_04895
Help
Entry
M5M_04895 CDS
T02281
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
saga
Simiduia agarivorans
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
saga03016
]
M5M_04895
Enzymes [BR:
saga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M5M_04895
Transfer RNA biogenesis [BR:
saga03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M5M_04895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
AFU98186
UniProt:
K4KGS4
LinkDB
All DBs
Position
1088275..1090233
Genome browser
AA seq
652 aa
AA seq
DB search
MLDASALQQLSQLKKDIRANKDIAQGTVRGTQSRYGFVHLDDGRDAFLAPDKMDRVFPGD
RVQVNVIDVSDGAGTKFEAEFEKLLESPLSYFVGQYVVRGQGHFVAPDVPGFSRWIFVPP
KARKNAKAGDWVACRITQHPYRKEGKAQAQILDVFGAEQDAGIEARYMLAKFELQANANP
ALDAAVNALSASLPEKLNEPGRQDLTDLDFVTIDADTTRDMDDALHIESTSEGYLLRVAI
AQPGALLGPQDPLTRHAQSLANTLYFPGTQQLMLPGPLSHDVFSLVQDQVRPVLVVSLQC
DKDGKVTGSDFSLARMRSRAKLSYQQVAALLDGKPHTIAEGLASMVNVLGEWSRKANAQR
SRDALIMEDRADYDFVLNEQQKIQQVVQLERTSAHQVVEEAMLATNVAAGQLFAEHKLPA
LYSSHAGPREDRLDTIAQMLAPYPELAALNVTELEGYVSLIRNLSAAGQEHLLSNLRRQL
QPGKLSLSPAPHLGLGFRHYATITSPIRRFNDLYNQMVIAHWLGLGEAPSLDESELETLQ
DVIGRGRQAVRQAESWMLCQFLGSQIGSEFDGKISMVNSAGFGVRLSDNSAEGFVLVRTK
TCKPDFDPIALTLTLPEQGVTYHLDKPVRVKLEAIESDSRRLTLSLVESGEA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgcctccgccctgcaacagctttcccagctcaaaaaagatatccgtgccaac
aaagacatcgcgcagggtaccgtgcgtggcacccaatcgcgctacggttttgttcatctg
gatgacggtcgggatgcctttctggcgccggataagatggaccgggtgtttccgggcgat
cgggttcaggtcaacgtcatcgacgtcagcgacggcgccggcaccaaatttgaggctgaa
tttgagaagctgttggaatcccccctgtcctactttgtcgggcagtacgtggtgcgcggc
cagggccattttgtcgcccccgacgtgcccggtttcagccgctggatttttgtgcctccc
aaagcccgcaaaaacgccaaagccggtgactgggtagcttgccggattacccaacacccc
taccgcaaagaaggcaaagcacaggcccagatcctggatgttttcggcgccgaacaggac
gcaggcattgaagcccgctacatgctggcgaaatttgaactgcaagccaacgccaacccg
gcattggatgcagccgtcaacgcgctcagtgcgtcactaccggaaaaactcaacgaaccg
ggccgccaggacctcactgacctggatttcgttaccattgacgccgacaccacgcgcgat
atggatgacgcactgcacatcgagtcaacgtccgagggctacctgctgcgcgtggccatt
gctcagcctggcgcattgttaggacctcaggatccactgacacgccatgcccagtcgctg
gccaacacactgtacttccctggcacacagcaattgatgctgccagggcccttgtcccac
gacgtgttttcgttagttcaggatcaggtacggccggtgctggtagtaagcctccagtgc
gataaggacggcaaggtcaccggcagcgacttcagcctcgcgcgcatgcgctcgcgcgcc
aagctgagctaccagcaagtcgccgctctgctcgacggtaagccgcataccattgccgag
ggactcgcctccatggttaacgtgctgggagaatggtcgcgcaaggccaacgcgcaacgc
agccgcgatgcactgatcatggaagaccgtgcggattacgatttcgtgcttaacgaacaa
caaaaaatccaacaggtagtgcagttggagcgcacatccgctcatcaggtggtcgaggaa
gcaatgctggcgaccaacgtcgcggccgggcagctgtttgccgaacacaagttacccgca
ctctattcctctcacgcagggccgcgtgaagaccggctggacactatcgcgcaaatgctg
gcgccctatccggaacttgcagcgcttaacgtcaccgaactggaaggctacgtgagcctg
atacgcaacctgagtgcagcgggccaggaacacctgctgtccaatctgcgtcgccagttg
cagcccggcaaattgagtttgtcacctgccccgcatctgggacttggcttccggcattac
gccacaattacgtccccgatccgtcgcttcaacgacctctacaatcagatggtcatcgca
cactggctgggtctgggcgaagcgcccagcctcgacgaaagcgaactggaaaccttacag
gatgtaatcggccggggtcgtcaggccgtgcgtcaggcagaaagctggatgctgtgccag
tttcttggcagccagattggcagcgaattcgacggcaaaatcagtatggtcaacagtgct
ggctttggcgtgcgcctgagtgataacagcgcagaggggtttgtgctggtgcgcaccaaa
acctgcaaacccgattttgatccgattgcactgacgctgacgttgcccgaacaaggcgtc
acctaccatctggacaaaccggtcagggtaaaactggaagcgattgagtcggattcaagg
cgcctgacattatcgcttgtggagagcggcgaagcctga
DBGET
integrated database retrieval system
