Simiduia agarivorans: M5M_05195
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Entry
M5M_05195 CDS
T02281
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
saga
Simiduia agarivorans
Pathway
saga03030
DNA replication
saga03430
Mismatch repair
saga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M5M_05195 (dnaE)
03430 Mismatch repair
M5M_05195 (dnaE)
03440 Homologous recombination
M5M_05195 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saga03032
]
M5M_05195 (dnaE)
03400 DNA repair and recombination proteins [BR:
saga03400
]
M5M_05195 (dnaE)
Enzymes [BR:
saga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M5M_05195 (dnaE)
DNA replication proteins [BR:
saga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M5M_05195 (dnaE)
DNA repair and recombination proteins [BR:
saga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M5M_05195 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HROB
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AFU98244
UniProt:
K4KGM9
LinkDB
All DBs
Position
complement(1149990..1153613)
Genome browser
AA seq
1207 aa
AA seq
DB search
MTAATPGFIHLRLHTEFSLTDSVVRVGPLINRLKELEMPACGVTDIANFYGLIKFYTKCE
GSGVKPIAGTDLTLVDEEGNESLITLLAMNDVGYKKITELISKGWQHGQYHGAARVQRDW
VRDHAEGVIALSGGRFGDVGKAVIAGRKQQAEQLLAAWQADFPNRFYLELTRTGRENEED
YLHAAVALAEKMQCPVVATNDVRFLHADEFEVHEARVCIGEGRALDDPRRERRYSEQQYL
RSAEEMADLFSDIPEALANSVEIAKRCSVNIQLGTYFLPDYPIPDDFEQGEIFSIYPLDY
MREEARTAMAGKWEGKESTPEYAEALRVNVFFQKITYEGLEWRLERILQRDDPDYDSKRQ
AFIDRLRFELGIIMQMGFPGYFLIVMDFIQWAKDNGIPVGPGRGSGAGSLVAYAQKITDL
DPLEYDLLFERFLNPERVSMPDFDVDFCMENRDKVISYVADKYGRDAVSQIITFGTMAAK
AVVRDVARVQGKSYGLADKLSKMIPPTPGMTLKQALEEEPLLKEFIETDGEAGEIWEMAV
KLEGLTRNVGKHAGGVVIAPTKLTDFAPLYCDETGGGLVTQYDKNDVESAGLVKFDFLGL
RTLTIIDWAVKMIDRDRQKTGEPPLDISALPLDDEKTFKLLKRAETTAVFQLESRGMKDL
IKRLQPDNLEDMIALVALFRPGPLQSGMVDDFINRKHGRAKVAYPDATYQHMSLKPILEP
TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFENGAADQGVDPD
LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVT
FIEECREMGLKLLPPDVNAGEFMFNVNPEGAIVYGLGAIKGLGEGPVDNIIQARNSGGPF
TSLFDFCARIDPRKVNKRALEALVRSGAFDTIGPQQSLDYDRAVLMSAIGEAVKAAEQSH
ANEAAGMMDLFGEVVPTAAAEDDDVYSEFRGVKSWTMRERLEGERDTLGLYLTGHPIDEY
ARELKYLVSNRIADLKPEKSNQRVAGLVVAMRVMKTKRGDTMAFVSLDDRSGRIEVALFS
DTYNNYREKIVKDAMLVIEGQVSHDDYSGMLKMRADSVNTLGEARAGLARGVHMEWQREA
IADKQVEALIQVLNQHRGGNCPVSVDLRNDIARGRVLFGSEWKVNASEQLLTELRDIFGE
EAVRMVY
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgcaaccccgggctttatccacctgcgcctgcatacagagttttccctcacc
gacagtgtggtgcgggtggggccgttgatcaaccggctgaaagagctggaaatgcccgcc
tgcggcgtgaccgatattgccaatttctacggcctcatcaagttctacaccaaatgtgag
ggcagtggcgtcaaacccattgccggtaccgatctgacgctggtggatgaggagggcaac
gaaagcctgatcaccctgttggccatgaacgatgtaggctacaaaaaaattaccgaactg
atttccaagggctggcaacacggtcagtatcacggtgccgcccgggtccagcgcgattgg
gtgcgcgatcatgccgaaggtgtgattgctttatccggcggacggtttggcgatgtgggt
aaagcagtgatcgccggccgcaagcagcaggcagaacaattactggcggcctggcaggcg
gattttcccaaccggttttatctggaactcacccgcaccgggcgcgaaaacgaagaagat
tatctgcacgcagctgtggcgctggcggagaaaatgcagtgcccggtggtggccaccaat
gatgtgcgctttctgcacgccgatgagtttgaagtgcatgaggcgcgcgtgtgcatcggc
gagggccgggcgttggatgacccgcgccgcgagcgccggtacagcgagcagcaatacctc
cgttcggccgaggaaatggccgacttgttcagcgatattccggaagcgctggcgaattcc
gtggaaattgctaagcgctgttcggtgaatatccagctcggcacctacttcctgcccgac
tacccgatcccggatgactttgagcaaggcgagattttttccatctatccgctggactac
atgcgcgaggaagcgcgcacggccatggcgggcaaatgggaaggcaaggagtccacgccc
gaatatgccgaagcgctgcgtgtgaatgtgtttttccagaaaatcacctatgaaggtctg
gaatggcggctcgaacgcattcttcagcgcgatgatccggactacgacagcaagcgacag
gcgtttattgaccggttgcggtttgagctcggcatcatcatgcagatgggattccccggc
tacttcctgatcgtaatggactttatccagtgggccaaagacaacggcattccggtggga
cctggccggggttccggtgccggttcgctggtggcctatgcgcagaaaattaccgacctg
gatccgctcgaatacgacctgctgttcgagcggttcctgaatccggagcgggtatccatg
cccgacttcgacgtggatttctgtatggaaaaccgcgacaaggtcatcagctacgtggcc
gacaaatacggccgcgatgcggtgagccagattattactttcggtaccatggccgcgaaa
gcggtggtgcgcgacgtggcgcgggtgcagggcaagagttacggcctggccgataaactc
tcaaaaatgatcccgcccacgcccggcatgacgctcaagcaggcgttggaagaagagccg
ctgctgaaggagtttatcgaaaccgacggcgaggcgggtgaaatctgggaaatggcagtg
aagctggaaggcctcacccgcaacgtgggtaagcacgccggtggcgtggtgatcgcgcct
accaaactcaccgattttgcgcccctgtattgcgatgaaaccggcggcggtctggtgacc
caatacgacaaaaacgatgtggaatccgcaggcctggtgaagtttgacttcctcggcctt
cgcacgctcaccatcatcgattgggcggtcaaaatgattgatcgcgaccggcaaaaaacc
ggcgagccaccgctcgatatttccgccctgccgctggatgatgagaaaaccttcaagctg
ttgaaacgcgcagaaaccacggcagtatttcagctcgaatcgcgcggcatgaaagacctg
atcaagcggctgcagcccgacaatctggaagacatgatcgccctggtggctctgttccgt
cctggcccgctgcagtccggcatggtggatgactttatcaaccgtaagcacggccgcgcc
aaggtggcttacccggatgccacttaccagcacatgtcactcaagccgattctggaaccc
acctacggggtgatcgtgtaccaggagcaggtgatgcagattgcccaggtgctggccggt
tatacgctcggtggcgctgacatgttgcgccgggctatgggtaagaaaaaacccgaggaa
atggccaagcagcgctccacttttgaaaacggcgcagccgatcagggcgtggacccggat
ctggcgatgaaaattttcgacctggtggaaaagtttgccggctacggttttaacaagtcc
cactccgccgcttacgcgttggtgtcctaccagactgcgtggctcaaggcgcattacccc
gcccacttcatggctgccaccatgtcgtcggacatggataaaaccgacaaggtggtgacc
tttattgaagaatgccgggagatggggctcaagctcctgccgccggatgtgaatgcgggc
gagttcatgtttaacgtgaatcctgaaggtgccattgtctatggcctgggtgccatcaaa
ggcctgggtgaaggccctgtagacaatattattcaggcccgcaacagcggcggccccttt
accagtctgtttgatttctgtgcccgcatcgacccgcgcaaagtgaacaagcgtgcattg
gaggcgttagtacgttcaggcgcttttgacactatcggtccgcagcaaagcctggattac
gaccgcgccgtactcatgtcggccatcggcgaggcggtgaaagccgccgagcaaagccac
gccaatgaagcggcgggcatgatggacttgtttggtgaggttgtacccacagcggccgcc
gaagatgatgatgtgtacagcgaattccgcggcgtgaaaagctggactatgcgcgagcgc
cttgagggcgagcgcgacaccttgggcttgtatctcactggccaccccattgatgaatac
gcgcgtgagttgaagtacctggtgtccaaccgcatcgccgatcttaagccggaaaaatcc
aaccagcgggttgccggtctggtggtggcgatgcgggtaatgaaaaccaaacgtggggat
actatggcgtttgtctcgctggatgatcgttcgggacgcattgaagtggcgttgttttcc
gatacctataacaactaccgggaaaaaattgtcaaagacgccatgctggtaattgaaggg
caggtgagtcacgacgattattccggcatgctgaaaatgcgtgctgacagcgtcaacaca
ctgggcgaagcacgcgccggtcttgcgcggggtgttcacatggaatggcaacgtgaagcc
atagccgataaacaggttgaagcgctgatacaggtgttgaaccagcatcgcggtggcaac
tgcccggtgtcggtggatttacgaaacgacatcgcccggggccgggtgttgtttggctca
gaatggaaagtcaatgcgtccgagcaattgttgacagagcttcgtgatatttttggcgaa
gaagccgtgcggatggtttattga
DBGET
integrated database retrieval system
