Simiduia agarivorans: M5M_09035
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Entry
M5M_09035 CDS
T02281
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
saga
Simiduia agarivorans
Pathway
saga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M5M_09035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saga03021
]
M5M_09035
03400 DNA repair and recombination proteins [BR:
saga03400
]
M5M_09035
Enzymes [BR:
saga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M5M_09035
Transcription machinery [BR:
saga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M5M_09035
DNA repair and recombination proteins [BR:
saga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M5M_09035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AFU98994
UniProt:
K4KIL7
LinkDB
All DBs
Position
complement(2004693..2005688)
Genome browser
AA seq
331 aa
AA seq
DB search
MQSAVNELFTPRQINVTELSPTRSKVVLEPLERGFGHTLGNALRRILLSSMPGCAITEVK
IDGVQHEYSAIEGVQEDVIEILLNLKGVAVVMHGKDQVELTLSKKGAGVVTAGDIQVDHE
VEIKNPEHVIANITGDKALNMKITVARGRGYEPADQRHSDEEETRAIGRLQLDASFSPVK
RLAYSVESARVEQRTDLDKLVLDLETNGTIEPEEAIRRAATILQQQLAVFVDLEDVGTTA
GAKPEEPPIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSL
TEIKDILASRGLSLGMRLENWPPAELRTDGK
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtgcagtaaacgagttatttacaccgcgccagatcaacgttaccgagctgagc
cccacccgctcaaaggtggtgttggagcctctggagcgtggttttggtcacaccctgggc
aatgcgctgcgtcgcattttgttgtcttccatgcccggttgtgccatcacagaagtgaaa
atcgatggtgtacaacacgaatacagcgcgattgaaggcgtgcaggaagacgtaattgaa
atcctgctgaacctgaaaggcgtggcagtggttatgcacggtaaggatcaggttgaactg
accctgtccaaaaaaggtgcgggcgtagtaactgccggcgatatccaggttgaccacgaa
gtcgagatcaagaatcccgagcacgtgatcgccaatatcaccggcgacaaggccctcaac
atgaagattaccgtggcccgcggccgcggttacgaacccgctgaccagcgtcatagcgat
gaggaagaaactcgcgcgattgggcgcttgcagttggatgcgtctttcagccccgttaag
cgtttggcttactcggtagaaagtgcacgtgttgagcagcgcaccgacctggataagctg
gttctggatctggaaactaacggcacaattgagccggaagaagccatccgtcgcgctgcc
accattctgcagcagcagctggccgtgtttgtagacctggaagatgtgggtaccactgct
ggcgccaagccagaagagccgcccatcgatccagtgctgctgcgtccagtagacgatctg
gaacttaccgtacgttcagccaactgtctgaaagcggaaaacatttactacatcggcgat
ctgattcagcgcactgaagttgagctgttgaagaccccgaacctgggtaaaaagtcactt
actgaaatcaaagacatccttgcgtctcgcggtctgtctttgggtatgcgtctggaaaac
tggcccccggccgagctccgcaccgacggtaagtaa
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