Simiduia agarivorans: M5M_10280
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Entry
M5M_10280 CDS
T02281
Name
(GenBank) Pectate lyase-like protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
saga
Simiduia agarivorans
Pathway
saga00040
Pentose and glucuronate interconversions
saga01100
Metabolic pathways
saga02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
M5M_10280
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
M5M_10280
Enzymes [BR:
saga01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
M5M_10280
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
AFU99237
UniProt:
K4KZ97
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Position
complement(2273655..2275256)
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AA seq
533 aa
AA seq
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MTPTPTPEPSPTPGATDGGFAGYQFALTGGAGGLVYTVNNGNDLRAKLAEAKAGSQPIVV
YIDGVITDANSGGQGKDIEIKDQDNVSLIGVADRASFDGIGLHIRRSKNIIVQNLTFHEP
WPGQERDAISIEGDDDGSVTGHIWIDHCELYHQLTSDKDYYDGLIDTKAGAYAVTVSYSY
LHHAHKTSLHGSSDTDTVPNADRFLTFHHNRFEHLTSRVPLFRHGKGHVYNNYFNEISST
AINSRMGAEILVEKNVFENTQNPVVSFGSSSIGYWNLVDNLMGPGVTWSTGSLDAHAQSG
ESTSTYTVPYSYTADSTDGLKEYILANAGVGKLDQSGLDIPPPVSAPPVDDGGGEEGEPV
ASLTLPLSESFTTSTEAFFTASYKSLTGSAGTGTPLYHRVTGSAEIVDGALSLTGARVSV
GNSTPTVSTTGSDQQTTGVLPLVADYRVSFKVVSVAGDTSKAFMIYVDNNTASSANSLWG
GASKFYSVALNSLVPGQTYQVSGLLASANSFLTLRTESAATIVLDDLVVEAAN
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
gtgacaccaactcccacaccggaacccagcccgaccccgggtgccaccgatggcggtttt
gccggatatcagtttgcgctcactggcggcgcgggtggtttggtctatacggtgaataat
ggcaatgacctgcgcgccaaactggctgaggccaaagccggcagtcagcccattgtggtg
tatatcgatggtgtgattaccgatgccaacagtggagggcagggcaaggatatcgagatc
aaagaccaggataatgtgtcgttgatcggcgtggccgatcgcgccagctttgacggtatc
gggctgcacatccggcgttcaaaaaatatcattgttcagaacctgaccttccatgagccc
tggcccgggcaggagcgggacgccatttccatcgaaggcgatgacgatggttcagtcacc
gggcatatctggattgatcattgcgagctataccaccagctcaccagcgacaaggattat
tacgatggtctgatcgataccaaggcgggggcttatgcggtaactgtttcttacagctat
ttgcatcatgcccacaaaacctcgctgcacggatcatccgataccgatacggtaccgaac
gccgaccgttttctcacctttcaccacaaccggtttgaacacctgacttcgcgcgtgccg
ctgttccgtcacggcaagggccatgtgtacaacaattattttaacgagatcagctccacc
gccattaactcgcgcatgggcgcggaaatactggtggaaaaaaacgtattcgaaaatacc
cagaacccggtggtgtcatttggttcgtccagtatcggttactggaatctggtggataat
ctcatgggacccggtgtgacctggagcacgggtagcctggatgcacacgcgcaaagcggc
gaatccacctcaacctatacggtgccctacagctacaccgccgacagcaccgatggcctg
aaagaatacattctggccaatgccggggtgggcaaactggatcagtcgggtctcgatatt
ccgccgccggtatcggcgccacctgtggatgacggtggtggcgaagaaggtgagcccgtc
gcctcgctgaccttgccgttgagcgaatcttttaccacaagtacggaagcgtttttcacc
gccagttacaaatccctgactggcagtgccggcaccggtacaccgctttaccatcgggtg
accggcagtgcggagattgtggatggcgcgctcagtttaaccggcgcacgggtcagtgtt
gggaacagtacgcccaccgtcagtaccaccggcagcgatcagcaaaccactggcgtgttg
ccgctggttgccgactatcgcgtgagctttaaggtggtgagtgtggctggcgataccagc
aaggcgttcatgatttacgtggacaacaatactgccagcagcgccaactcgttgtggggc
ggtgcgtcaaagttctattcagtggcgcttaatagccttgtgcccggccagacgtatcag
gtgtcggggttgttggcgtcggctaattcgttcctgaccctgcgcacggaaagtgctgcg
actattgtgctggacgatctggttgttgaagcggccaattaa
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