Simiduia agarivorans: M5M_11625
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Entry
M5M_11625 CDS
T02281
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
saga
Simiduia agarivorans
Pathway
saga03030
DNA replication
saga03410
Base excision repair
saga03420
Nucleotide excision repair
saga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M5M_11625
03410 Base excision repair
M5M_11625
03420 Nucleotide excision repair
M5M_11625
03440 Homologous recombination
M5M_11625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saga03032
]
M5M_11625
03400 DNA repair and recombination proteins [BR:
saga03400
]
M5M_11625
Enzymes [BR:
saga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M5M_11625
DNA replication proteins [BR:
saga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M5M_11625
DNA repair and recombination proteins [BR:
saga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
M5M_11625
NER (nucleotide excision repair)
GGR (global genome repair) factors
M5M_11625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
SpnB_Rossmann
Motif
Other DBs
NCBI-ProteinID:
AFU99502
UniProt:
K4KZZ9
LinkDB
All DBs
Position
complement(2590560..2593307)
Genome browser
AA seq
915 aa
AA seq
DB search
MTAPVVLVDGSSYLYRAFHALPPLTNSKGMPTGAVKGVINMIRRLLKDYPGSPVVVVFDA
KGKTFRDDMFPDYKAQRPPMPDDLRPQVQPIHDIVRAMGLPLLVEEGVEADDVIGTYCQQ
ATAAGIPVIVSTGDKDMAQLVNEHVTLVNTMTDTVMDPAGVEAKFGLPPSLIIDFLALMG
DKVDNIPGVPGVGEKTALGLLQGLGSLDSIYANLDKVKDLSFRGAKTMAAKLEEHKDKAY
MSYALATIKLDCDLPEPIQALANGEPDKARLLALFQDMEFKTWVNELEGEGVVAEVSESS
HAAEGPDTKGALAREYEIITTEAAFERWLLTLESQPAFAFDTETTSLDYMEAEIVGVSFS
VEPGRAAYVPVAHDYMEAPEQLDRNWVLAKLKPLLEAETPRKIGQNLKYDASVLANYQIA
LNGIGYDTMLESYVLNSTASRHDMDSLAGFYLDETTVKFEDIAGKGAKQLTFNQIALEQA
GPYAAEDADITFRLHQALWPQLEAAPSLKSVFEFIELPLLPVLSAVERTGALVDAKRLGE
QSVELGERLVTLEREAFELAGQPFNLSSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVL
QELALDYPLPNILMEYRGLAKLKSTYTDKLPQMINPRTGRIHTSYHQAVTATGRLSSTDP
NLQNIPIRTEEGRRIRQAFVAPKGYKLVAADYSQIELRIMAHLSDDKGLLDAFAQGLDVH
KATAAEVFGVDLDSVTADMRRSAKAINFGLIYGMSAFGLAKQLHLGRNEAQQYIDTYFER
YPGVARYMDNTRALAHEQGYVETLFGRRLYLPEINASNKMRQQAAERTAINAPMQGSAAD
IIKRAMVDVHQWLSGENAPDARIIMQVHDELVLEVAEDQVDALTGELCERMSRAADLKVP
LLVEAGVGDNWDQAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgcctgttgtcctggtagatggttcgtcctatctctaccgcgccttccacgcc
ctgccgccactcaccaatagcaagggtatgcccacgggcgcggtgaagggcgtgattaat
atgatccggcgcctgttgaaggactacccgggcagcccggtggtggtggtgtttgatgcc
aagggcaaaaccttccgcgatgacatgttcccggactacaaggcccaacgtccgcccatg
cccgatgacctgcgcccgcaagtgcagcccatccacgacatagtgcgcgccatgggactg
ccgctgctggtggaagaaggggtagaggccgacgacgtgattggtacctattgccagcag
gccacggcggcgggtattccggtgattgtgtccaccggcgataaagacatggcgcagctg
gtgaatgagcatgtgacgctcgtgaataccatgaccgacacggtgatggaccccgccggg
gtggaagccaagttcggcctgccgcccagtctgatcatcgattttctggcgctgatgggc
gacaaggtcgacaatatccccggcgtgccgggcgtgggggagaaaaccgctttgggtctg
ttacaggggctgggcagcctggacagcatttacgccaatctcgacaaggtgaaagacctg
agtttccgcggggccaaaaccatggcagccaaactggaggagcataaggacaaagcctac
atgtcctatgcactcgccaccatcaagctcgattgcgacctgcccgagccgatccaggcc
ctggccaatggcgagcccgataaagcgcgcctgctcgcgctgttccaggacatggaattc
aaaacctgggtcaacgagctggaaggcgaaggtgtggtggcggaagtcagtgagtcttca
cacgccgcagagggtccggacaccaaaggcgcgctggcgcgcgaatacgaaatcattacc
accgaagcagcgttcgaacgctggttgctgacgctggaatcccaaccggcgtttgcgttt
gataccgaaaccaccagtctcgattacatggaagctgagattgtgggggtgtctttttcg
gtggagccgggccgcgccgcctatgtgccggtggcgcacgattatatggaagcgcccgaa
cagctggaccggaactgggtgctggccaaactcaagccgttgctggaagccgagacgccc
aggaagatcggccagaacctcaagtatgacgcctcggtactggccaattaccagatagcg
ctcaacggcattggctacgacaccatgctggaaagctacgtactcaactccacggccagc
cggcacgatatggacagcctggcgggcttctatctggacgaaaccacggttaaattcgag
gatattgccggtaaaggcgccaaacagctcacctttaatcagattgcgctggagcaggcc
ggcccttatgcggccgaagacgccgatattaccttccgcctgcaccaggccctgtggccc
cagctggaagccgcgccctcgctcaaatctgtgttcgaattcatcgaattgccgctgttg
ccggtgctcagcgcggtggagcgcaccggtgcgctggtggatgccaagcggctgggtgag
cagagtgtggagctcggcgagcggctggtaaccctcgagcgcgaggcgtttgagctggcg
ggtcagccgtttaatttgtcctcacccaagcagctgggggaaatcctgttcgacaaactc
ggcttgccggtcattaagaagacccccaagggggcaccctcaacggcggaagaagtattg
caggaactggcgttggactacccgctgccaaacatcctgatggaataccgcggtctggcc
aaactcaagagcacctataccgacaagctgccgcagatgatcaatccgcgcaccggccgg
attcatacctcttaccatcaggcggtgacggccaccgggcgcttgtcctccaccgacccc
aacctgcagaacatcccgatacgcaccgaagaaggccggcgcatccgtcaggcgtttgtg
gcgcccaagggttacaagctggtggcggcggactattcgcagattgagctgcgcatcatg
gcgcatttgtccgatgacaagggtttgctggatgccttcgctcaggggttggatgtgcac
aaggccacggcggccgaagtattcggtgtggacctggactcagtgaccgccgacatgcgc
cgcagcgccaaggcgattaacttcggtttgatttacggcatgtcggcttttggcctcgcc
aagcaactgcatctgggccgtaacgaagcccagcaatacatcgatacctatttcgagcgc
tacccgggcgtggcccgctacatggacaacacccgcgcgcttgcgcacgaacagggctat
gtggaaaccctgttcggccggcgcctgtacctgccggaaatcaacgccagtaacaaaatg
cgccaacaggctgccgagcgcaccgctatcaatgcgcccatgcagggcagcgcggcggat
atcatcaagcgcgccatggtggatgtgcaccagtggttgagcggtgagaacgcgcccgat
gcccgcattatcatgcaggttcacgacgaattggtgctggaagtggccgaagatcaggtg
gatgccctcaccggcgagctgtgcgaacgcatgagccgcgccgccgatctgaaggtgccc
ctgttggtggaagccggcgtgggcgacaactgggaccaggcccattaa
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