Simiduia agarivorans: M5M_11830
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Entry
M5M_11830 CDS
T02281
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
saga
Simiduia agarivorans
Pathway
saga00300
Lysine biosynthesis
saga00470
D-Amino acid metabolism
saga01100
Metabolic pathways
saga01110
Biosynthesis of secondary metabolites
saga01120
Microbial metabolism in diverse environments
saga01230
Biosynthesis of amino acids
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
M5M_11830
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
M5M_11830
Enzymes [BR:
saga01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
M5M_11830
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AFU99543
UniProt:
K4KN52
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All DBs
Position
2629688..2630935
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AA seq
415 aa
AA seq
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MAYFPRVQGRLHVESLPLADIAHEFGTPTYVYSRAALTDAFQAYQHALGDHPGLVCFAVK
ANSNLGVLGLLADLGAGFDIVSEGELERVLLAGGKPEKIVFSGVGKTPAAMRKALEVGVH
CFNVESEAELELLSEVALQCGTTAPVSLRVNPDVDAKTHPYISTGLKENKFGIDIARAPE
VYARAAALAGLRVVGVDCHIGSQLTELDPFLDALDRLLALINQLKHRGISLEHIDIGGGL
GVTYQQETPPPIAELINAVKARLSDSGLALVMEPGRSICANAGVLLTEVLFLKPTEHKNF
AIIDAAMNDNIRPALYQAWQGAEVVDQHAGETKTWDLVGPVCETGDFLAKDRPLALAAGD
LIAVMSTGAYGFTMSSNYNSRPRAAEVMVDGDRAHLVRARETLADLTRGESLLPN
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcttactttccccgcgtgcagggtcgcttgcacgttgaatccctgcctctggcggat
atcgcgcacgaattcgggacccccacctatgtgtacagccgcgccgccctgaccgatgcc
ttccaggcgtatcagcacgccctcggcgaccatcccggactcgtgtgctttgcggtaaag
gccaattctaacctgggcgttctggggctgttggccgacctgggcgcgggtttcgatatt
gtctctgaaggtgaactggagcgggtcttactggccggcggcaagcccgaaaaaattgtc
ttttccggcgttggcaaaaccccggctgccatgcgcaaagcgctggaagtgggcgtgcat
tgtttcaatgtggaatcggaagccgagctggaactgctgtcggaggtggccctgcaatgc
ggcaccacggcgccggtttcgctgcgggtgaacccggatgtggatgccaaaacccacccc
tacatttccaccggcctgaaagagaacaaattcgggatcgatattgcgcgcgcgcccgaa
gtttacgcccgtgccgcggcgttagcaggcttgcgggtggtgggcgtggattgccacatc
ggttcccagctcaccgaactggacccctttctggatgcgctcgatcgcctgctggcgctg
attaatcaactcaaacaccgcggcatctcgctcgaacacatcgatattggcggcggcctg
ggcgtgacctatcaacaggaaacaccgccgcccatcgccgagctgatcaatgccgtcaaa
gcgcgcctgtcggactcgggtctggccctggtcatggagcccggccgctccatttgtgcc
aatgccggtgtattgctgaccgaagtgctgttcctgaagcccaccgagcacaagaacttt
gccattatcgacgccgccatgaacgacaacatccggccggccttataccaggcctggcaa
ggtgcggaagtggtggatcagcacgcgggcgaaaccaaaacctgggacctggtgggcccg
gtctgtgaaaccggcgattttctcgccaaggatcgccctctggcacttgcagccggcgac
ctgatcgcagtaatgtccacgggagcttacggctttaccatgagttccaattacaacagc
cggccccgcgccgctgaggtgatggtagacggcgaccgcgcccacctggtgcgcgcacgt
gaaaccctggccgacctgactcgtggcgagagcctgttacccaattga
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