Simiduia agarivorans: M5M_17260
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Entry
M5M_17260 CDS
T02281
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
saga
Simiduia agarivorans
Pathway
saga03030
DNA replication
saga03430
Mismatch repair
saga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M5M_17260 (holA)
03430 Mismatch repair
M5M_17260 (holA)
03440 Homologous recombination
M5M_17260 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saga03032
]
M5M_17260 (holA)
03400 DNA repair and recombination proteins [BR:
saga03400
]
M5M_17260 (holA)
Enzymes [BR:
saga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M5M_17260 (holA)
DNA replication proteins [BR:
saga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M5M_17260 (holA)
DNA repair and recombination proteins [BR:
saga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M5M_17260 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_delt_C
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
AFV00583
UniProt:
K4L307
LinkDB
All DBs
Position
complement(3803474..3804523)
Genome browser
AA seq
349 aa
AA seq
DB search
MAKLRAEQLAAAASKSLAPIYIISGDEPLLVQEACDTLRQSARQQGYTERERYHADKSFD
WGQLHASAASLSLFAEKKIIELHITGGKPGTEGGKALQEYAARPADDNLLLIVLPKIDRN
TQKAKWFSALEQAGVFIQIWPINGAQLHQWLDQRLSAAGLSADRSAIDMLATRIEGNLLA
AAQEIEKLKLLATDGRVDSQLLANVVANSARYDIFGLVDKALLGDVQAAVRNLQGLKGEG
TEPLAILWALTRDIRSLLQVAAGTASGSNFDWACKQAGVWDSKKSIVSAALRRLKPNELE
VLLRKCNGIDRAVKGMRPADPWDELLDLVLQLAGVRSLTASNTRMSLSI
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggccaagctgcgcgctgagcaattggctgcggccgccagcaaaagcctggcgcccatc
tacatcatcagtggtgacgagccgctcttggtgcaggaagcctgtgacaccttgcgccaa
tccgctcgccaacagggctataccgaacgcgagcgctatcacgccgacaaaagcttcgac
tggggtcagctgcacgccagtgcggcaagcctgtcgttgtttgccgaaaagaaaattatc
gagttgcacatcaccggtggcaaacccggcactgaaggtggaaaagccttgcaggagtat
gcggcacgcccggcagacgacaacctgctgcttattgtgctgccaaaaattgatcgcaac
acccaaaaggccaaatggttttccgcgctggaacaggcgggggttttcattcagatctgg
ccgatcaatggcgcccaattacatcaatggctggaccaacggctcagtgcggcaggcctg
agtgcggacagaagcgccatcgacatgttggcaacccgcatcgaaggcaatttactggcg
gcggcgcaggaaatcgaaaaactgaaactactggcaaccgatggccgggtggattcacag
ttactggccaatgtggtggccaattccgcccgctacgatattttcgggctggtggacaaa
gccctgttgggcgatgttcaggcagcagtacgcaacctgcagggcctgaaaggcgaaggc
acggaacccctcgctattttgtgggcactcacgcgcgatatccggtcgttattgcaagtg
gctgcgggcaccgccagtggcagcaacttcgactgggcatgcaaacaggccggcgtgtgg
gattccaaaaagtccatcgtcagcgccgcgctgcgccgcctgaagcccaacgaactggaa
gtcttgttgcgtaaatgcaacggtatcgaccgggcggttaagggcatgcgcccggccgac
ccctgggacgaattgctcgaccttgtattgcagctggccggggtacgcagcctgaccgcg
agcaatacccgcatgagtttgagcatttaa
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