Simiduia agarivorans: M5M_18130
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Entry
M5M_18130 CDS
T02281
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
saga
Simiduia agarivorans
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
saga03016
]
M5M_18130
Enzymes [BR:
saga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
M5M_18130
Transfer RNA biogenesis [BR:
saga03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M5M_18130
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AFV00755
UniProt:
K4KNL4
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All DBs
Position
3990010..3991161
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AA seq
383 aa
AA seq
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MSRIATDPIWVDTEAELAQLCARWSQQAAIAIDTEFMRSQTYYPHAGLIQVGDGKGCYLI
DPLAIKDLSALAQLLVNPSVIKVIHSCSEDLETFRFLLGVVPKPLFDTQVAAAFANIGFS
MGYANLVKDQLGIELDKGETRSDWMQRPLSQSQMHYAALDVAYLLVVYGKILIRLKALDR
LSWVQEECAQLVANAEAPDQFDDAYTKVKLAWKLYPDQLAILKPLCIWREQEARKLDVPR
NRLMKEGAAWEVARRKPTTVKQLSAIDGMGNRTLKHYADTVLGFVADAQQRKEDLPARLD
KPLTPAQGDILKQFKACAVAVSETAQVTPEILTRKKDLEQLTRSVIAGQPELPDGLKGWR
YPVVGQQLEQLAQALCEQNPEMS
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtatcgccaccgaccccatctgggtcgataccgaagccgagctggcgcagtta
tgtgcgcgttggtcgcagcaggcggccatcgccatcgacaccgaattcatgcgcagccag
acctactatcctcacgccggcctgattcaggtgggcgatggcaaaggctgttacctgatc
gatccgctggccattaaagacttatctgcgctggcgcaattgctggtgaatccttcggtc
ataaaagtcatccactcctgttcggaagatctggaaaccttccggtttttattgggtgtg
gtgcccaagccattgttcgacacccaggttgccgcggcgttcgcgaacatcggtttttcc
atgggttatgccaatctggtgaaagaccagttaggtattgagctcgataaaggcgagacc
cgttccgactggatgcagcgcccgctgagccaatcgcaaatgcattatgcggcgttggat
gtggcctatttgctggtggtgtacggcaaaattttaatcaggctcaaagccctggatcgg
ctcagctgggtgcaggaagaatgcgcgcagctcgtggccaatgccgaagcgccggatcag
tttgatgatgcctataccaaggtcaaactggcctggaaactctacccggatcagctcgcg
attttaaagcccttgtgtatctggcgcgaacaggaagcgcgcaagttggatgtgccgcgc
aaccgtttgatgaaagaaggcgccgcctgggaagtggcccgacgcaaacccaccacggta
aagcagctgtccgccattgatgggatgggcaatcgcacgctcaagcattatgccgacacg
gtattgggcttcgtggccgatgcccagcagcgcaaagaggatttaccggcgcggttggac
aagccgttgacgccggcgcaaggcgatattctcaaacaattcaaagcctgtgccgtcgca
gtatcggagaccgcgcaggtgacgccggaaattcttacccgcaaaaaagaccttgaacaa
ctcacccgcagcgtgattgccggtcagcccgaactgcccgatgggctcaaaggatggcga
tacccggtagtcggccagcaactggaacagctggcgcaagccttatgtgaacaaaacccg
gagatgtcatga
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