Simiduia agarivorans: M5M_18910
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Entry
M5M_18910 CDS
T02281
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saga
Simiduia agarivorans
Pathway
saga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5M_18910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saga03019
]
M5M_18910
Enzymes [BR:
saga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M5M_18910
Messenger RNA biogenesis [BR:
saga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M5M_18910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
ERCC3_RAD25_C
UvrD-helicase
Cas3-like_C_2
AAA_22
DsrH
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AFV00911
UniProt:
K4KRJ0
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All DBs
Position
4162128..4163432
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AA seq
434 aa
AA seq
DB search
MSITFDQLGLCAPILKAVAEQGYTTPSPIQAQAIPAVLKGQDVMAAAQTGTGKTAGFTLP
ILERLQSMQRAASNHVKVLVLTPTRELAAQIEDNVKLYSAHLPVRSTVVFGGVGINPQMM
RLRKGVEILVATPGRLLDLHSQNAVKFNQLEILVLDEADRMLDMGFIHDIKRILKLLPDR
RQNLLFSATFSDEIRALAKGLVHNPLEIDIAPRNTTVETVTQWLSPVDKKQKPALLIHLI
KEHNWHQVLVFSRTKHGANKLAKQLEDAGLEAAAIHGNKSQNARTKALADFKANKIRVLV
ATDIAARGIDIDQLPQVVNVDLPNVPEDYVHRIGRTGRAGAEGQAVSLVCADELKELKQI
ERLTKQVIERKLVPGFEPVNPLPVTQLDTRPIKPNRPKKPKSEHHDGNRGGSAKKMGDQP
KPRRRRRPPANRTA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcactttcgaccagctcggtctgtgcgcccccatccttaaagccgttgccgag
cagggttacaccacgccatcgcccattcaggcgcaggccattccggccgtgctcaagggg
caggacgtgatggccgcggcccagaccggtaccggcaagaccgccggctttaccttgccg
attctggagcggttgcaatccatgcaacgcgcggccagtaatcacgtgaaagtactggtg
ctcacgcctacgcgcgagctggcggcgcagatcgaagacaacgtcaaactctacagcgcc
catctgcccgtgcgcagtaccgtggtatttggcggggtaggcatcaacccgcagatgatg
cgcctgcgcaagggcgtggaaatcctcgtggccacccccggccgcctgctggatctacac
agccagaatgcggtgaagttcaatcagctggaaattctggtgctggacgaagccgaccgc
atgctcgacatgggctttatccacgacatcaagcgcatcctgaaactgctgccggaccgc
cgccagaacctgctgttctcggccaccttttccgacgaaatccgcgcgctcgccaagggc
ctggtgcacaacccgctggaaatcgacatagcgccgcgcaacaccacggtagaaaccgtg
acccagtggctatcgccggtggataaaaaacagaagccggcgctgctgattcacctgatc
aaagagcacaactggcaccaggtgctggtgttttcccgcaccaagcacggcgccaacaaa
ctcgccaaacaactggaagatgccggccttgaagccgctgccattcatggcaacaaaagc
cagaatgcccgcaccaaagccctggcggatttcaaagccaacaagatccgcgtactggtg
gccaccgacatcgccgcgcgcggtatcgatatcgaccaactgccgcaggtggtgaacgtg
gacctgcccaatgtgccggaagactatgtacaccgcatcggccgcaccggtcgcgcgggc
gccgaggggcaggcggtgtcattggtgtgtgcggatgaactgaaagaactcaagcagatt
gagcggctcaccaaacaggtgatcgagcgcaaactggtgccgggcttcgagccggtgaat
cccttgcccgtgacccaactcgatacccggcccattaagcccaaccggccgaaaaagccc
aagtctgagcaccacgacggcaaccgcggcggctccgccaaaaaaatgggcgaccaaccc
aaaccccgtcgccgccgccgtccgccggcaaaccgcaccgcctaa
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