Streptococcus agalactiae NGBS061: EN72_08175
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Entry
EN72_08175 CDS
T03516
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sage
Streptococcus agalactiae NGBS061
Pathway
sage03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sage00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EN72_08175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sage03019
]
EN72_08175
03016 Transfer RNA biogenesis [BR:
sage03016
]
EN72_08175
Enzymes [BR:
sage01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EN72_08175
Messenger RNA biogenesis [BR:
sage03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EN72_08175
Transfer RNA biogenesis [BR:
sage03016
]
Prokaryotic type
tRNA degradation factors
EN72_08175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
HTH_DeoR
S1_RRP5
HTH_24
DUF5638
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AIF87050
UniProt:
A0A0E1EIM3
LinkDB
All DBs
Position
complement(1583980..1586385)
Genome browser
AA seq
801 aa
AA seq
DB search
MKEKIIKYLEEHGKTSVNDLAAALDMAGAKAFPKLIKTISNLESHRQLRFDDNGSLSLRK
KEAKKKEITVRGLFRANKAGFGFLSIDQDEDDMFIGKNDIAYAIDGDTVEAVVKKPADRL
KGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSKNQKINQKIYIRKEPVVLDGT
EIIKVDIDKYPTRGHDYFVASVRDIVGHQGDVGIDVLEVLESMDIVSEFPEDVIAEANAI
PDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKLLDNGHFELGVHIADVSYYVTE
GSALNREALSRGTSVYVTDRVVPMLPERLSNGICSLNPNLDRLTQSCIMEIDQNGKVVNH
QITQSVINTTYRMTYTAVNDIIAGDEEICSEYESIVPSVQHMVTLHHILETMRTRRGALN
FDTSEAKIMVNDKGMPVDIVIRNRGIAERMIESFMLAANETVAEHYARLKLPFIYRIHEE
PKAEKLQKFIDYASIFGVHIQGTATKITQPALQDFMKKVQGQPGSEVLSMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIRDYGDKAMDKADHFANLIPEIATQT
SSLERRAIDAERIVEAMKKAEYMEEYIGEEFEGVVASVVKFGMFVELPNTIEGLVHVTTL
PEYYHFNERTLTLQGEKSGKVFRVGQQIKVKLIRSDKETGDIDFDYLPSDFDIVEKVSKS
SREGRPNRSSKREHQHRISDRDNKNKNTSKKKASRKPQRNSDSKSHHHKDDRTTGSTKKK
TKKPFYKGVAKKGQKRKSKKG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaattataaaatatttggaagaacacggtaaaaccagcgttaatgactta
gctgctgccctagatatggcaggcgcaaaagcatttccaaaattaatcaaaacaatctca
aatttggagagccacaggcaattaagatttgacgataatggaagtctttctcttcgaaag
aaagaagctaagaaaaaggaaatcacagtaagaggtctttttagagcaaataaagcagga
tttggttttcttagtattgaccaagacgaagatgatatgtttatcggaaaaaacgatatt
gcttatgctattgatggtgacacggtagaagctgttgtaaagaaaccagcggaccgtctt
aaagggactgcagcagaagcgcgtgttgttaatattgttgaacgtagtttaaagacgctt
gttggtaagtttgtcttagacgatgagcgccctaaatacgcaggatatatcaaatcaaaa
aatcaaaaaatcaatcaaaagatttatatacgcaaagaaccggtcgttttagacggaaca
gaaattatcaaagtagatattgataaatatccgacacgaggacatgattacttcgtagca
agtgttcgtgatatcgttggacatcaaggagatgttggtattgatgttttagaagtcttg
gaaagtatggatatcgtctcagaatttcctgaggacgttattgcagaagctaatgctatc
ccagatgctccaacggagaaagatttaattgggcgtgttgatttacgtcaagaggtcact
ttcactattgatggagcggatgccaaagatttagacgatgctgtgcatattaaattactg
gataatggtcattttgaacttggagttcatatcgcagatgtatcatactacgttactgaa
ggctctgccttaaatcgtgaagcacttagtcgtggtacgtctgtatatgtcacagatcgc
gttgtaccaatgttaccagagcgtctatctaacggtatatgttcattaaatccaaatctt
gatcgtttaacgcagtcttgtattatggaaattgaccaaaatgggaaagttgttaatcat
caaattacacagtcagtgattaataccacttatcgtatgacttataccgctgtaaatgat
attattgctggcgatgaggaaatctgctcagaatatgagtctattgtgccctcagtacag
catatggttactttacaccatattttggaaactatgcgtacgcgtcgtggagcgctgaat
tttgatacatctgaagcaaaaattatggttaatgataagggaatgccagttgatattgtt
attcgcaacagaggcattgctgaacgcatgattgagtcatttatgttggcggcaaatgaa
acggttgctgaacattatgctcgtctaaaattgccatttatttatcgtatacacgaagag
cctaaagctgaaaaattacaaaaattcatcgattatgcttctattttcggtgttcacatt
caaggaacagcaactaaaatcacccaacctgctttacaggactttatgaaaaaagtacaa
gggcagccaggaagtgaagtgttatctatgatgttattgcgctcgatgcaacaagctaga
tattctgaacacaaccatggacattatggacttgctgcggaatattacactcactttact
agccccattcgacgttatccagacttgttagttcatcgtatgattcgtgattatggtgat
aaagcgatggataaagctgatcattttgctaaccttatcccagaaattgcaactcaaacg
tctagtcttgagagacgtgccattgatgctgaacgtattgtagaggcaatgaagaaagcc
gaatacatggaagaatatattggtgaggaatttgaaggtgtggttgcaagcgttgttaaa
tttggtatgtttgtagaattaccaaatactattgaaggattggttcacgtaacgaccttg
cctgaatattatcactttaatgaacgtacgctgacgcttcaaggtgagaaatctgggaaa
gttttccgtgttggtcaacaaattaaggttaagttgattcgttctgataaggaaactggt
gatatcgattttgattatttaccatcagattttgatattgttgaaaaggtaagtaaaagt
tcgcgtgagggtcgtcctaatcgaagttctaaacgagaacatcagcatagaatttctgat
cgtgataataagaacaaaaatacatctaagaaaaaagcatctcgaaaaccccaaaggaac
tcggatagcaaatcacatcatcacaaagacgatagaacaacaggttcaaccaagaaaaaa
acgaaaaaacctttctataaaggcgttgctaagaaaggtcagaaacggaaatctaagaaa
ggttaa
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