Streptococcus agalactiae NGBS572: EN73_00045
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Entry
EN73_00045 CDS
T03517
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sagg
Streptococcus agalactiae NGBS572
Pathway
sagg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EN73_00045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sagg03400
]
EN73_00045
Enzymes [BR:
sagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EN73_00045
DNA repair and recombination proteins [BR:
sagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EN73_00045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
UB2H
AAA_16
RecG_dom3_C
AAA_5
Motif
Other DBs
NCBI-ProteinID:
AIF87693
UniProt:
A0AAW6XX51
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All DBs
Position
6348..9845
Genome browser
AA seq
1165 aa
AA seq
DB search
MNIIELFSQNKVVWTWHSGLVTNSRQLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTD
SDKLSSDISSLIGEDNVYQFFADDVPAAEFIFSSLDKSISRLSALRFLKDPEKNGVLITS
ISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSPGEFSQRGDIL
DIFEMTQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKK
KLEGYLVTASEVQRTYLSEVLSTTENHFKHSDIRRFLSIFYEKEWGILDYIPEGTPLFVD
DFQKIVDRNAKLDLEIASLLTEDLQQGKSHSSLNYFSDPYKQLRQYQPATFFSNFHKGLG
NLKFDKLHHFTQYGMQEFFNQFPLLVDEINRYKKSGATVLLQVDSQKGLNLLQENLKEYG
LDLIISDKNDIVQKESQLIVGHLSNGFYFADEKIVLITEREIYHRRVKRKIRRSNISNAE
RLKDYNELSVGDYVVHNVHGVGKFLGIETIEIQGIHRDYLTIQYQNADRISIPVEQIELL
TKYVSADGKEPKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYAERSQLQGFAFSPDDNM
QNDFDNDFAYVETEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVVVLVPTTVLAQQHFENFKERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIG
THRLLSQDVVFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREIDRGGQVFYVYNKVDTIDQKVSEL
QELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIATKQGKSLIRQKGNAELALQIDAYLP
AEYISDERQKIEIYKRIRELETRADYEALQDELIDRFGEYPDQVAYLLEIGLLKAYLDLA
FTELVERKGNEISILFEKASLKYFLTQDYFEALSKTQLKARISETNGKMEVVFNIKHKKN
YEIIEELLKFAECFIEIKSRKPVEE
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaatattatagaattatttagccaaaataaagtggtgtggacatggcactctggatta
gtaactaatagtcgccaattagttatggggttttcaggagcaagtaaagctattgccata
gcatcagcctacgagaagttatctaaaaaaattatggtagtcactgccactcaaaccgat
tctgataaattatcaagtgatatatcaagtttaattggagaagataacgtttatcaattt
tttgctgatgacgttcctgcagcagagtttattttctcttcattagataaatcaatttca
cgactcagtgccctgaggtttctaaaagatccagaaaaaaacggtgttttgattactagt
atcagtggtttaaggttactattaccaaatccggaagttttctcgaaaagtcaatataag
tttgaaatcggtcaagaatgttatttagataaattgtgtaagaacctagtcaatttaggt
tatcagaaagtttctcaagtatttagtcctggtgaatttagccaaagaggagatatttta
gatatttttgagatgacacaagaatatccttatcgcttggaattcttcggagatgaaata
gatggcatcaggcagtttgatattgacactcaaaagtctcttaaacaattagagtcagta
cagatttcgccagcagatgatattattttacaagatgcagatttcgagcgtgcaaagaaa
aaacttgagggctatctagtaacagctagtgaggtacaacgcacctatttgagcgaggtt
ttatctacaactgagaatcattttaagcactcagatattcgtcgttttctaagtatcttt
tatgaaaaagaatggggaatattagactatattcctgagggaactccactttttgttgat
gattttcaaaaaattgtagatcgaaatgctaagttagatttagaaatagctagccttctg
acggaagatttacaacaaggcaagtctcattctagtttgaactatttttcagatccttat
aagcaattaagacaataccaaccagcaaccttcttttcaaatttccacaaaggattagga
aatctgaaatttgataaacttcatcattttactcaatatggaatgcaagaattttttaat
caatttccattgttggtcgatgaaatcaatcgttataagaaatctggagcgacagtactg
ttgcaagtagattctcaaaaaggtttaaatctccttcaagaaaatttaaaagaatatggg
ttagatttaatcatttcagataaaaacgatatcgttcaaaaggagtcacaacttattgtt
gggcatctttcaaatggtttttattttgcagatgagaaaattgttctgattactgaacgt
gagatttatcataggcgtgttaaaaggaaaattagacgcagtaatattagtaatgcagaa
cgtctaaaagattataatgaactttcagttggcgattatgttgttcataatgttcatggc
gtaggaaaatttttaggtattgaaacaattgagatacaaggtattcatcgtgattatctg
actattcaatatcaaaatgctgatcgtatctctatccccgtagaacaaattgaacttcta
acaaaatatgtctctgcagatggcaaagagcctaaaattaatacgttaaatgatggtcgc
ttcaaaaaagcaaaacagagagttgcaaagcaagtagaagatattgctgatgatttgttg
aaactttatgcagagcgtagtcaattacaaggatttgcattttctcctgacgataatatg
caaaatgactttgataatgattttgcatatgtagagacagaggatcaattgcggtctata
aaagaaattaaacaggatatggaaggtaatcgtccgatggatcgattattggttggagac
gttggttttggtaagacagaggttgctatgcgtgcggctttcaaagctgtcaatgaccat
aaacaagttgttgttttagtcccaacaacagttctagcccagcagcattttgaaaatttt
aaagaacgttttagcaattatcctgttacagttgatgtacttagtcgttttcgtagcaaa
aaagaacaaacagatacactaaaaagattatctaagggccaagttgatattattattgga
acacatcgacttctctctcaagatgttgtattttcggatttagggttaatagttattgat
gaggaacagcgatttggtgtaaagcataaagaaaagttaaaagaattaaaaacaaaagtt
gatgtattaactttgacagcgaccccaatacctagaacattacatatgtcaatgcttggc
attagagacttatcagtcattgaaacacctccaactaatcgttatcctgtgcagacttac
gttttggagacaaatcctggtttagttagagaagctattattcgtgagatagacagagga
ggacaggttttttatgtttacaataaagttgacactattgatcagaaagtttcagaactt
caggagttagtaccagaagctagtattggttttgttcatggtcaaatgtctgaaattcaa
ttagaaaatacattaatagactttatcaatggagattacgatgttttagttgcaacgaca
ataattgagacaggagtcgatatttcaaatgttaataccctctttgttgaaaatgcagat
catatgggcttgtcaaccctttatcaattaagaggccgtgtgggtagaagtaatcgcatt
gcttatgcttaccttatgtacagacctgataaagttttaacagaaatttctgagaaaaga
ctagatgcaatcaaagggtttacagaattgggatctggttttaaaatagcgatgcgtgat
ttatctatacgtggtgcaggaaatattttaggagcttcacaaagtggttttattgattcg
gttggattcgagatgtattcacagcttctagagcaagcgattgccaccaaacaagggaaa
tcattaattcgtcaaaaaggtaatgctgaattagccttacaaattgacgcctatttacca
gcagaatatatatcagatgagcgccaaaaaatagaaatatataagcgtattcgtgaatta
gaaactagggctgattatgaagccttacaagatgagttaatagatcgttttggagaatat
cctgatcaagttgcataccttttagaaataggacttttaaaagcttatctggaccttgcc
tttactgaattagtagaaagaaaaggtaatgaaataagcatcctatttgaaaaagcatct
ttgaagtattttttaactcaagattattttgaagcactatcaaaaactcaacttaaggct
agaattagcgaaacaaatggtaagatggaagttgtttttaatatcaaacataagaaaaat
tatgaaattattgaagaacttctaaaatttgccgaatgttttatcgagattaagtcacgt
aaaccagtagaagaataa
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