Streptococcus agalactiae ILRI005: MSA_13090
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Entry
MSA_13090 CDS
T02704
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sagi
Streptococcus agalactiae ILRI005
Pathway
sagi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSA_13090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagi03019
]
MSA_13090
Messenger RNA biogenesis [BR:
sagi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSA_13090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Regulator_TrmB
DUF6175
DUF7513
Motif
Other DBs
NCBI-ProteinID:
CCW40167
LinkDB
All DBs
Position
complement(1194146..1195807)
Genome browser
AA seq
553 aa
AA seq
DB search
MSDIKIMALGGVRENGKNLYVVEVNDSIFVLDAGLKYPENEQLGVDVVIPNLDYLIENKK
RVQGIFLTHGHADAIGALPYIIAEVKAPVFGSPLTIELAKLFVKNSTAVKKFNNFHVIDS
ETEIEFQDAVISFFKTTHSIPESMGIVIGTKEGNIVYTGDFKFDQAARKYYQTDLARLAE
IGRDGVLALLSDSANATSNEQVASEYEVGDEIKSVIEDAEGRVIVAAVASNLIRIQQVFD
AAAENGRRVVLTGFDIENIVRTAIRMKRIHIADENMIIKPKDMTRYEDNELLILETGRMG
EPINGLQKMAIGRHRYVQIKDGDLVFIVTTPSIAKEAVVARVENLIYKAGGSVKLITQNL
RVSGHANGRELQLLMNLLKPKYLFPIQGEYRDLSAHAGLAQEVGMSADDIYIVKRGDIMV
LEKDGFFHSGSVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVVITVSKKEKKIISK
ARVNTRGFVYVKKSRDILRESAELVNTTVEDYLSKDTFDWGELKGKVRDEVSKFLFDQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacataaaaatcatggctcttggaggtgttcgtgaaaacggaaaaaacctatat
gtagtagaagtcaatgattctatctttgttttggatgctggactcaaatatcctgaaaat
gaacaactgggtgttgatgttgttattccaaatcttgattacttaattgaaaataaaaaa
cgtgttcaggggattttcttaacccatggacatgcggatgctattggtgcattgccttat
attatcgccgaagtcaaagcacctgtgtttggctcacctctcacaattgaattagctaag
ttattcgttaaaaatagtacagcagtcaagaaattcaataatttccatgtaattgatagt
gaaacggaaattgaatttcaagatgcggtgatttcgttctttaaaacgactcattcaatt
ccagagtcaatgggaattgttattgggacaaaagagggaaatatcgtttacacaggtgac
tttaaatttgatcaagctgcaaggaaatattaccaaacagatctggcacgtttagctgaa
attggtcgtgatggtgttttagcacttttatcagattctgcaaatgctacaagcaatgag
caagttgctagcgaatatgaggtcggtgatgaaattaagagcgttattgaagacgcagaa
ggtagagtcatcgtagcagcagttgcaagtaacctcattcgtattcaacaggtctttgat
gcagcggcagaaaacggtcgtcgagtagttttaacaggttttgatattgaaaatattgtt
cgtacggccattcgtatgaaacgcattcatattgctgatgaaaatatgattatcaaacct
aaagatatgacacgttacgaagataacgaattattaatccttgaaactggacgtatggga
gagccgataaatggtctccaaaaaatggcgattggacgtcatcgttatgttcaaattaaa
gatggtgatttagtatttatcgtaacaacaccaagtattgcaaaagaggcagttgtagcg
cgtgttgaaaatctgatttataaagctggtggctcagttaaattgataacacagaatttg
cgcgtatcaggtcatgcaaatggtcgcgaattacaattattaatgaatctattgaaacct
aaataccttttcccaattcaaggagagtatagggatttgtcagcacatgcgggcttagct
caagaggtaggaatgtcagcagatgatatttatattgtgaagcgtggtgacatcatggtt
cttgaaaaagatggcttcttccatagtggatctgttcctgctggagatgttatgattgat
ggaaatgctattggtgatgttggtaatattgtacttcgtgaccgcaaggtattatctgaa
gatggaatttttattgttgttataactgtcagcaaaaaagaaaagaaaattatttctaaa
gctcgtgttaatacgcgtggttttgtgtatgtgaaaaaaagcagagatattttgcgtgag
agcgcagaattagttaatacaacggtagaagattacttaagcaaagatacatttgactgg
ggtgaacttaaagggaaagtgcgtgatgaggtcagcaagtttttatttgaccaaacgaaa
cgtcgcccagcaatccttcctgtggttatggaagttcgttga
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