Streptococcus agalactiae CJB111: ID870_02240
Help
Entry
ID870_02240 CDS
T08770
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sagj
Streptococcus agalactiae CJB111
Pathway
sagj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ID870_02240 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagj03019
]
ID870_02240 (rnr)
03016 Transfer RNA biogenesis [BR:
sagj03016
]
ID870_02240 (rnr)
Enzymes [BR:
sagj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ID870_02240 (rnr)
Messenger RNA biogenesis [BR:
sagj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ID870_02240 (rnr)
Transfer RNA biogenesis [BR:
sagj03016
]
Prokaryotic type
tRNA degradation factors
ID870_02240 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
HTH_DeoR
S1_RRP5
HTH_24
RNase_II_C_S1
HTH_5
Motif
Other DBs
NCBI-ProteinID:
QOW77192
LinkDB
All DBs
Position
complement(1485182..1487587)
Genome browser
AA seq
801 aa
AA seq
DB search
MKEKIIKYLEEHGKTSVNDLAAALDMAGAKAFPKLIKTISNLESHRQLRFDDNGSLSLRK
KEAKKKEITVRGLFRANKAGFGFLSIDQDEDDMFIGKNDIAYAIDGDTVEAVVKKPADRL
NGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSKNQKINQKIYIRKEPVVLDGT
EIIKVDIDKYPTRGHDYFVASVRDIVGHQGDVGIDVLEVLESMDIVSEFPEDVIAEANAI
PDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKLLDNGHFELGVHIADVSYYVTE
GSALNREALSRGTSVYVTDRVVPMLPERLSNGICSLNPNLDRLTQSCIMEIDQNGRVVNH
QITQSVINTTYRMTYTAVNDIIAGDEEICSEYESIVPSVQHMVTLHHILETMRTRRGALN
FDTSEAKIMVNDKGMPVDIVIRNRGIAERMIESFMLAANETVAEHYARLKLPFIYRIHEE
PKAEKLQKFIDYASIFGVHIQGTATKITQPALQDFMKKVQGQPGSEVLSMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIRDYGDKAMDKADHFANLIPEIATQT
SSLERRAIDAERIVEAMKKAEYMEEYIGEEFEGVVASVVKFGMFVELPNTIEGLVHVTTL
PEYYHFNERTLTLQGEKSGKVFRVGQQIKVKLIRSDKETGDIDFDYLPSDFDIVEKVSKS
SREGRPNRSSKREHQHRISDRDNKNKNTSKKKASRKPQRNSDSKSHHHKDDRTTGSTKKK
TKKPFYKGVAKKGQKRKSKKG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaattataaaatatttggaagaacacggtaaaactagcgttaatgactta
gctgctgccctagatatggcaggcgcaaaagcatttccaaaattaatcaaaacaatctca
aatttggagagccacaggcaattaagatttgacgataatggaagtctttctcttcgaaag
aaagaagctaagaaaaaggaaatcacagtaagaggtctttttagagcaaataaagcagga
tttggttttcttagtattgaccaagacgaagatgatatgtttatcggaaaaaacgatatt
gcttatgctattgatggtgacacggtagaagctgttgtaaagaaaccagcggaccgtctt
aacgggactgcagcagaagcgcgtgttgttaatattgttgaacgtagtttaaagacgctt
gttggtaagtttgtcttagacgatgagcgccctaaatacgcaggatatatcaaatcgaaa
aatcaaaaaatcaatcaaaagatttatatacgcaaagaaccggtcgttttagacggaaca
gaaattatcaaagtagatattgataaatatccgacacgaggacatgattacttcgtagca
agtgttcgtgatatcgttggacatcaaggagatgttggtattgatgttttagaagtcttg
gaaagtatggatatcgtctcagaatttcctgaggacgttattgcagaagccaatgctatc
ccagatgctccaacggagaaagatttaattgggcgtgttgatttacgtcaagaggtcact
ttcactattgatggagcggacgccaaagatttagacgatgctgtgcatattaaattactg
gataatggtcattttgaacttggagttcatatcgcagatgtatcatactacgttactgaa
ggctctgccttaaatcgtgaagcacttagtcgtggtacgtccgtatatgtcacagatcgc
gttgtaccaatgttaccagagcgtctatctaacggtatatgttcattaaatccaaatctt
gatcgtttaacgcagtcttgtattatggaaattgaccaaaatgggagagttgttaatcat
caaattacacagtcagtgattaataccacttatcgtatgacttataccgctgtaaatgat
attattgctggcgatgaggaaatctgctcagaatatgagtctattgtgccctcagtacag
catatggttactttacaccatattttggaaactatgcgtacgcgtcgtggagcgctgaat
tttgatacatctgaagcaaaaattatggttaatgataagggaatgccagttgatattgtt
attcgcaacagaggcattgctgaacgcatgattgagtcatttatgttggcggcaaatgaa
acggttgctgaacattatgctcgtctaaaattgccatttatttatcgtatacacgaagag
cctaaagctgaaaaattacaaaaattcatcgattatgcttctattttcggtgttcacatt
caaggaacagcaactaaaatcacccaacctgctttacaggactttatgaaaaaagtacaa
gggcagccaggaagtgaagtgttatctatgatgttattgcgctcgatgcaacaagctaga
tattctgaacacaaccatggacattatggacttgctgcggaatattacactcactttact
agccccattcgacgttatccagacttgttagttcatcgtatgattcgtgattatggtgat
aaagcgatggataaagctgatcattttgctaaccttatcccagaaattgcaactcaaacg
tctagtcttgagagacgtgccattgatgctgaacgtattgtagaggcaatgaagaaagcc
gaatacatggaagaatatattggtgaggaatttgaaggtgtggttgcaagcgttgttaaa
tttggtatgtttgtagaattaccaaatactattgaaggattggttcacgtaacgaccttg
cctgaatattatcactttaatgaacgtacgctgacgcttcaaggtgagaaatctgggaaa
gttttccgtgttggtcaacaaattaaggttaagttgattcgttctgataaggaaactggt
gatatcgattttgattatttaccatcagattttgatattgttgaaaaggtaagtaaaagt
tcgcgtgagggtcgtcctaatcgaagttctaaacgagaacatcagcatagaatttctgat
cgtgataataagaacaaaaatacatctaagaaaaaagcatctcgaaaaccccaaaggaac
tcggatagcaaatcacatcatcacaaagacgatagaacaacaggttcaaccaagaaaaaa
acgaaaaaacctttctataaaggcgttgctaagaaaggtcagaaacggaaatctaagaaa
ggttaa
DBGET
integrated database retrieval system
