Staphylococcus agnetis: EP23_01550
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Entry
EP23_01550 CDS
T04155
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sagq
Staphylococcus agnetis
Pathway
sagq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP23_01550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagq03019
]
EP23_01550
Messenger RNA biogenesis [BR:
sagq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EP23_01550
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ALN76131
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Position
complement(301006..302688)
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AA seq
560 aa
AA seq
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MKQLHKNEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYSYL
EQNQDKIVGLFITHGHEDHIGGVPYLLKKINVPIYGGPLALGLIRNKLEEHHLLRTASLN
EIDEDSVITSKHFEISFYLTTHSIPETYGVIVDTPEGKIVHTGDFKFDFTPVGAPANIAK
MARLGDEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRGCTGRIIFATFASNIYRVQQ
AVEAAVKYNRKIVTFGRSMENNIKIGTELGYIKAPPETFVEPNKINSIPKHELLILCTGS
QGEPMAALSRIANETHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYQAGAEVIHNKI
SNIHTSGHGSQGDQQLMLRLIRPKYFLPIHGEYRMLKAHGQTGVDCGVAEDNVFIHDIGD
VLALTRDSARTAGRIPSGNILVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFKTNQL
LSGPDIISRGFVYMRESGQLIYDAQRKIKKDVIYKLNNNDNIQWHQIKSSIIETLQPYLY
EKTARKPMILPVIMKVNEDK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaacttcataaaaacgaagtgggagtatatgcacttggtggtttaggtgagatt
ggtaaaaacacttatgctgttgagtacaaagatgaaatcgtcatcattgatgcaggaatt
aagttccccgatgataacctattaggtattgactatgtcattcctgattattcttacctt
gaacaaaaccaagataaaattgttggtttgtttattacacatggtcatgaagatcacatt
ggtggtgtgccctacctgcttaaaaaaatcaatgttcctatttatggcggcccacttgca
ctcggtttaatccgtaataagcttgaagaacatcatctactgcgcacagcatctttaaat
gaaattgatgaagattcagtcatcacatcaaagcattttgaaatcagcttttacctcaca
actcacagcatacctgaaacgtacggtgtaattgtagatacaccagaaggtaaaattgtt
catacaggagattttaaattcgactttacacctgtaggcgctccagcaaacattgcaaaa
atggcacgtcttggagatgaaggcgtactatgtttgttgtcagattctacaaattcactt
gttccagactttacattaagtgaacgtgaagtaggtcaaaatgtcgataaaattttcagg
ggttgtactggacgtattatcttcgcaacttttgcttcaaatatttaccgtgttcaacaa
gctgttgaagctgccgttaaatataatcgcaaaatcgttacttttggacgttcaatggaa
aacaatattaaaatcgggacagagcttggttacattaaagctccgcctgaaacgtttgta
gaaccaaataaaattaatagcatccctaaacatgaattattaattttatgtacaggctct
caaggtgaaccgatggctgcactttcacgtattgccaatgaaacacataagcaaattaaa
atcattcctgaagacactgttgtttttagttcttcaccgattcctggtaatacaaaaagc
attaaccgtacaattaatgcattgtatcaagctggtgctgaagtgattcacaataagatt
tcaaacattcatacatcaggtcacggctctcaaggtgatcaacaattaatgttacgttta
attcgtcctaaatacttcctacctattcacggggagtatcgtatgttaaaagcgcatgga
caaacaggtgttgattgtggtgtagctgaagataacgtcttcattcatgatatcggagat
gtattagctttaacgcgcgattctgcacgtactgctggacgtattccatctggtaatata
ttagtagatggtagcggtattggtgatatcggaaatgtcgtgattcgagatcgtaaatta
ttatcagaagaaggtttagtcattgtcgttgtgagtattgacttcaaaacgaatcaattg
ctttcaggcccagatattatttctcgtggtttcgtttatatgcgtgaatctggtcaattg
atttacgatgcgcaacgtaaaattaaaaaagatgtcatttataaattaaataacaacgac
aatatccaatggcatcaaatcaaatcatccatcatcgaaacattacaaccgtatttatat
gagaaaacagcacgtaaaccgatgattttaccagtcattatgaaagtcaatgaagacaaa
taa
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