Streptococcus agalactiae ILRI112: SAIL_13040
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Entry
SAIL_13040 CDS
T02705
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sagr
Streptococcus agalactiae ILRI112
Pathway
sagr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAIL_13040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagr03019
]
SAIL_13040
Messenger RNA biogenesis [BR:
sagr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAIL_13040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Regulator_TrmB
DUF6175
DUF7513
Motif
Other DBs
NCBI-ProteinID:
CCW42318
LinkDB
All DBs
Position
complement(1210402..1212063)
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AA seq
553 aa
AA seq
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MSDIKIMALGGVRENGKNLYVVEVNDSIFVLDAGLKYPENEQLGVDVVIPNLDYLIENKK
RVQGIFLTHGHADAIGALPYIIAEVKAPVFGSPLTIELAKLFVKNSTAVKKFNNFHVIDS
ETEIEFQDAVISFFKTTHSIPESMGIVIGTKEGNIVYTGDFKFDQAARKYYQTDLARLAE
IGRDGVLALLSDSANATSNEQVASEYEVGDEIKSVIEDAEGRVIVAAVASNLIRIQQVFD
AAAENGRRVVLTGFDIENIVRTAIRMKRIHIADENMIIKPKDMTRYEDNELLILETGRMG
EPINGLQKMAIGRHRYVQIKDGDLVFIVTTPSIAKEAVVARVENLIYKAGGSVKLITQNL
RVSGHANGRELQLLMNLLKPKYLFPIQGEYRDLSAHAGLAQEVGMSADDIYIVKRGDIMV
LEKDGFFHSGSVHAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVVITVSKKEKKIISK
ARVNTRGFVYVKKSRDILRESAELVNTTVEDYLSKDTFDWGELKGKVRDEVSKFLFDQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacataaaaatcatggctcttggaggtgttcgtgaaaacggaaaaaacctatat
gtagtagaagtcaatgattctatctttgttttggatgctggactcaaatatcctgaaaat
gaacaactgggtgttgatgttgttattccaaatcttgattacttaattgaaaataaaaaa
cgtgttcaggggattttcttaacccatggacatgcggatgctattggtgcattgccttat
attatcgccgaagtcaaagcacctgtgtttggctcacctctcacaattgaattagctaag
ttattcgttaaaaatagtacagcagtcaagaaattcaataatttccatgtgattgatagt
gaaacggaaattgaatttcaagatgcggtgatttcgttctttaaaacgactcattcaatt
ccagagtcaatgggaattgttattgggacaaaagagggaaatatcgtttacacaggtgac
tttaaatttgatcaagctgcaaggaaatattaccaaacagatctggcgcgtttagctgaa
attggtcgtgatggtgttttagcacttttatcagattctgcaaatgctacaagcaatgag
caagttgctagcgaatatgaggtcggtgatgaaattaagagcgttattgaagacgcagaa
ggtagagtcatcgtagcagcagttgcaagtaacctcattcgtattcaacaggtctttgat
gcagcggcagaaaacggtcgtcgagtagttttaacgggttttgatattgaaaatattgtt
cgtacggccattcgtatgaaacgcattcatattgctgatgaaaatatgattatcaaacct
aaagatatgacacgttatgaagataacgaattattaatccttgaaactggacgtatggga
gagccgataaatggtctccaaaaaatggcgatcggacgtcatcgttatgttcaaattaaa
gatggtgatttagtatttatcgtaacaacaccaagtattgcaaaagaggcagttgtagcg
cgtgttgaaaatctgatttataaagctggtggctcagttaaattgataacacagaatttg
cgcgtatcaggtcatgcaaatggtcgcgaattacaattattaatgaatctattgaaacct
aaataccttttcccaattcaaggagagtatagggatttgtcagcacatgcgggcttagct
caagaggtaggaatgtcagcagatgatatttatattgtgaagcgtggtgacatcatggtt
cttgaaaaagatggcttcttccatagtggatctgttcatgctggagatgttatgattgat
ggaaatgctattggtgacgttggtaatattgtacttcgtgaccgcaaggtattatctgaa
gatggaatttttattgttgttataactgtcagcaaaaaagaaaagaaaattatttctaaa
gctcgtgttaatacgcgtggttttgtgtatgtgaaaaaaagcagagatattttgcgtgag
agcgcagaattagttaatacaacggtagaagattacttaagtaaagatacatttgactgg
ggtgaacttaaagggaaagtgcgtgatgaggtcagcaagttcttatttgaccaaacgaaa
cgtcgcccagcaatccttcctgtggttatggaagttcgttga
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