Streptococcus agalactiae SA20: SaSA20_1005
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Entry
SaSA20_1005 CDS
T02338
Symbol
rnj_1
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sags
Streptococcus agalactiae SA20
Pathway
sags03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sags00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SaSA20_1005 (rnj_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sags03019
]
SaSA20_1005 (rnj_1)
Messenger RNA biogenesis [BR:
sags03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SaSA20_1005 (rnj_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
AFV72463
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Position
complement(1058400..1060061)
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AA seq
553 aa
AA seq
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MSDIKIMALGGVRENGKNLYVVEVNDSIFVLDAGLKYPENEQLGVDVVIPNLDYLIENKK
RVQGIFLTHGHADAIGALPYIIAEVKAPVFGSPLTIELAKLFVKNSTAVKKFNNFHVIDS
ETEIEFQDAVISFFKTTHSIPESMGIVIGTKEGNIVYTGDFKFDQAARKYYQTDLARLAE
IGRDGVLALLSDSANATSNEQVASEYEVGDEIKNVIEDAEGRVIVAAVASNLIRIQQVFD
AAAENGRRVVLTGFDIENIVRTAIRMKRIHIADENMIIKPKDMTRYEDNELLILETGRMG
EPINGLQKMAIGRHRYVQIKDGDLVFIVTTPSIAKEAVVARVENLIYKAGGSVKLITQNL
RVSGHANGRELQLLMNLLKPKYLFPIQGEYRDLSAHAGLAQEVGMSADDIYIVKRGDIMV
LEKDGFFHSGSVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVVITVSKKEKKIISK
ARVNTRGFVYVKKSRDILRESAELVNTTVEDYLSKDTFDWGELKGKVRDEVSKFLFDQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacataaaaatcatggctcttggaggtgttcgtgaaaacggaaaaaacctatat
gtagtagaagtcaatgattctatctttgttttggatgctggactcaaatatcctgaaaat
gaacaactgggtgttgatgttgttattccaaatcttgattacttaattgaaaataaaaaa
cgtgttcaggggattttcttaacccatggacatgcggatgctattggtgcattgccttat
attatcgccgaagtcaaagcacctgtgtttggctcacctctcacaattgaattagctaag
ttattcgttaaaaatagtacagcagtcaagaaattcaataatttccatgtgattgatagt
gaaacggaaattgaatttcaagatgcggtgatttcgttctttaaaacgactcattcaatt
ccagagtcaatgggaattgttattgggacgaaagagggaaatatcgtttacacaggtgac
tttaaatttgatcaagctgcaaggaaatattaccaaacagatctggcacgtttagctgaa
attggtcgtgatggtgttttagcacttttatcagattctgcaaatgctacaagcaatgag
caagttgctagcgaatatgaggtcggtgatgaaattaagaacgttattgaagacgcagaa
ggtagagtcatcgtagcagcagttgcaagtaatctcattcgtattcaacaagtctttgat
gcagcggcagaaaacggtcgtcgagtagttttaacgggttttgatattgaaaatattgtt
cgtacggccattcgtatgaaacgcattcatattgctgatgaaaatatgattatcaaacct
aaagatatgacacgttatgaagataacgaattattaatccttgaaactggacgtatggga
gagccgataaatggtctccaaaaaatggcgattggacgtcatcgttatgttcaaattaaa
gatggtgatttagtatttatcgtaacaacaccaagtattgcaaaagaggcagttgtagcg
cgtgttgaaaatctgatttataaagctggtggctcagttaaattgataacacagaatttg
cgcgtatcaggtcatgcaaatggtcgcgaattacaattattaatgaatctattgaaacct
aaataccttttcccaattcaaggagagtatagggatttgtcagcacatgcgggcttagct
caagaggtaggaatgtcagcagatgatatttatattgtgaagcgtggtgacatcatggtt
cttgaaaaagatggcttcttccatagtggatctgttcctgctggagatgttatgattgat
ggaaatgctattggtgacgttggtaatattgtacttcgtgaccgcaaggtattatctgaa
gatggaatttttattgttgttataactgtcagcaaaaaagaaaagaaaatcatttctaaa
gctcgtgttaatacgcgtggttttgtgtatgtgaaaaaaagcagagatattttgcgtgag
agcgcagaattagttaatacaacggtagaagattacttaagtaaagatacatttgactgg
ggtgaacttaaagggaaagtgcgtgatgaggtcagcaagttcttatttgaccaaacgaaa
cgtcgcccagcaatccttcctgtggttatggaagttcgttga
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