Streptococcus agalactiae COH1: GBSCOH1_0008
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Entry
GBSCOH1_0008 CDS
T03434
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sagt
Streptococcus agalactiae COH1
Pathway
sagt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sagt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GBSCOH1_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sagt03400
]
GBSCOH1_0008
Enzymes [BR:
sagt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GBSCOH1_0008
DNA repair and recombination proteins [BR:
sagt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GBSCOH1_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CDN65474
LinkDB
All DBs
Position
6330..9827
Genome browser
AA seq
1165 aa
AA seq
DB search
MNIIELFSQNKVVRTWHSGLVTNSRQLVMGFSGASKAIAIASAYEKLSKKIMVVTATQND
SDKLSSDISSLIGEDNVYQFFADDVPAAEFIFSSLDKSISRLSALRFLKDPEKNGVLITS
ISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDIL
DIFEMTQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKK
KLEGYLVTASEEQRAYLSEVLSTTENHFKHSNIRRFLSIFYEKEWGILDYIPEGTPLFVD
DFQKIVDRNAKLDLEIASLLTEDLQQGKSHSSLNYFSDPYKQLRQYQPATFFSNFHKGLG
NLKFDKLHHFTQYGMQEFFNQFPLLVDEINRYKKSGATVLLQVDSQKGLNLLQENLKEYG
LDLIISDKNDIVPKESQLIVGHLSNGFYFADEKIVLITEREIYHRRVKRKIRRSNISNAE
RLKDYNELSVGDYVVHNVHGVGKFLGIETIEIQGIHRDYLTIQYQNADRISIPVEQIELL
TKYVSADGKEPKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYAERSQLQGFAFSPDDNM
QNDFDNDFAYVETEDQLRSIKEIKQDMEGNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAVLVPTTVLAQQHFENFKERFSNYPVTVDVLSRFRSKKEQTDTLKRLSKGQVDIIIG
THRLLSQDVVFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREIDRGGQVFYVYNKVDTIEQKVSEL
QELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISEKRLDAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIATKQGKSLIRQKGNVELALQIDAYLP
AEYISDERQKIEIYKRIRELETRADYEALQDELIDRFGEYPDQVAYLLEIGLLKAYLDLA
FTELVERKGNEISIIFEKASLKYFLTQDYFEALSKTQLKARISETNGKMEVVFNIKHKKN
YEIIEELLKFAECFIEIKSRKPVEE
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaatattatagaattatttagccaaaataaagtggtgcggacatggcactctggatta
gtaactaatagtcgccaattagttatggggttttcaggagcaagtaaagctattgctata
gcatcagcctacgagaagttatctaaaaaaattatggtagtcactgccactcaaaacgat
tctgataaattatcaagtgatatatcaagtttaattggagaagataacgtttatcaattt
tttgctgatgacgttcctgcagcagagtttattttctcttcattagacaaatcaatttca
cgactcagtgccttgaggtttctaaaagatccagaaaaaaacggtgttttgattactagt
atcagtggtttaaggttactattaccaaatccggaagttttctcgaaaagtcaatataag
tttgaaatcggtcaagaatgttatttagataaattgagtaagaacttagtcaatttaggt
tatcagaaagtttctcaagtatttagtcctggtgaatttagccaaagaggagatatttta
gatatttttgagatgacacaagaatatccttatcgcttggaattcttcggagatgaaata
gatggcatcaggcagtttgatattgacactcaaaagtctcttaaacaattagagtcagta
cagatttcgccagcagatgatattattttacaagatgcagatttcgagcgtgcaaagaaa
aaacttgagggctatctagtaacagctagtgaggaacaacgcgcctatttgagcgaggtt
ttatctacaaccgagaatcattttaagcactcaaatattcgtcgttttctaagtatcttt
tatgaaaaagaatggggaatattagactatattcctgagggaactccactttttgttgat
gattttcaaaaaattgtagatcgaaatgctaagttagatttagaaatagctagccttctg
acggaagatttacaacaaggcaagtctcattctagtttgaactatttttcagatccttat
aagcaattaagacaataccaaccagcaaccttcttttcaaatttccacaaaggattagga
aatctgaaatttgataaacttcatcattttactcaatatggaatgcaagaattttttaat
caatttccattgttggtcgatgaaatcaatcgttataagaaatctggagcgacagtactg
ttgcaagtagattctcaaaaaggtttaaatctccttcaagaaaacttaaaagaatatggg
ttagatttaatcatttcagataaaaacgatatcgttccaaaggagtcacaacttattgtt
gggcatctttcaaatggtttttattttgcagatgagaaaattgttctgattactgaacgt
gagatttatcataggcgtgttaaaaggaaaattagacgcagtaatattagtaatgcagaa
cgtctaaaagattataatgaactttcagttggcgattatgttgttcataatgttcatggc
gtaggaaaatttttaggtattgaaacaattgagatacaaggtattcatcgtgattatctg
actattcaatatcaaaatgctgatcggatctctatccccgtagaacaaattgaacttcta
acaaaatatgtctctgcagatggcaaagagcctaaaattaatacgttaaatgatggtcgc
ttcaaaaaagcaaaacagagagttgcaaagcaagtagaagatattgctgatgatttgttg
aaactttatgcagagcgtagtcaattacaaggatttgcattttctcctgacgataatatg
caaaatgactttgataatgattttgcatatgtagagacagaggatcaattgcggtcgata
aaagaaattaaacaggatatggaaggtaatcgtccgatggatcgattattggttggagac
gttggttttggtaagacagaggttgctatgcgtgcggctttcaaagctgtcaatgaccat
aaacaagttgctgttttagtcccaacaacagttctagctcagcagcattttgaaaatttt
aaagaacgttttagtaattatcctgttacagttgatgtacttagtcgttttcgtagcaaa
aaagaacaaacagatacactaaaaagattatctaagggccaagttgatattattattgga
acacatcggcttctctctcaagatgttgtattttcggatttagggttaatagttattgat
gaggaacagcgatttggtgtaaagcataaagaaaagttaaaagaattaaaaacaaaagtt
gatgtcttaactttgacagcgaccccaatacctagaacattacatatgtcaatgcttggc
attagagacttatcagtcattgaaacacctccaactaatcgttatcctgtgcagacttac
gttttggagacaaatcctggtttagttagagaagctattattcgtgagatagacagagga
ggacaggttttttatgtttacaataaagttgacactattgaacagaaagtttcagaactt
caggagttagtaccagaagctagtattggttttgttcatggtcaaatgtctgaaattcaa
ttagaaaatacattaatagactttatcaatggagattacgatgttttagttgcaacgaca
ataattgagacaggagtcgatatttcaaatgttaataccctctttgttgaaaatgcagat
catatgggcttgtcaaccctttatcaattaagaggccgtgtgggtagaagtaatcgcatt
gcttatgcttaccttatgtacagacctgataaagttttaacagaaatttctgagaaaaga
ctagatgcaatcaaagggtttacagaattgggatctggttttaaaatagcgatgcgtgat
ttatctatacgtggtgcaggaaatattttaggagcttcacaaagtggttttattgattcg
gttggattcgagatgtattcacagcttctagagcaagcgattgccaccaaacaaggaaaa
tcattaattcgtcaaaaaggtaatgttgaattagccttacaaattgacgcctatttacca
gcagaatatatatcagatgagcgccaaaaaatagaaatatataagcgtattcgtgaatta
gaaactagggctgattatgaagccttacaagatgagttaatagatcgttttggagaatat
cctgatcaagttgcataccttttagaaataggacttttaaaagcttatctggatcttgcc
tttactgaattagtagaaagaaaaggtaatgaaataagcatcatatttgaaaaagcatct
ttgaaatattttttaactcaagattattttgaagcactatcaaaaactcaacttaaggct
agaattagcgaaacaaatggtaagatggaagttgtttttaatatcaaacataagaaaaat
tatgaaattattgaagaacttctaaaatttgccgaatgttttatcgagattaagtcacgt
aaaccagtagaagaataa
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