Streptococcus agalactiae COH1: GBSCOH1_0288
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Entry
GBSCOH1_0288 CDS
T03434
Name
(GenBank) KH domain protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sagt
Streptococcus agalactiae COH1
Pathway
sagt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBSCOH1_0288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagt03019
]
GBSCOH1_0288
Messenger RNA biogenesis [BR:
sagt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GBSCOH1_0288
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
KH_NusA_2nd
HDOD
KH_2
KH_KhpA-B
dUTPase
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
CDN65754
LinkDB
All DBs
Position
316989..318596
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AA seq
535 aa
AA seq
DB search
MFNIILAMVCALIGLIIGYVAISMKMKSSKEAAELTLLNAEQDAVDLRGKAEIEAEHIRK
AAERESKAHQKELLLEAKEEARKYREEIEKEFKSDRQELKQMEARLTDRASSLDRKDENL
SNKEKMLDSKEQSLTDKSRHINEREQEIATLETKKVEELSRIAELSQEEAKDIILADTEK
DLAHDIATRIKEAEREVKDRSNKIAKDLLAQAMQRLAGEYVTEQTITTVHLPDDNMKGRI
IGREGRNIRTLESLTGIDVIIDDTPEVVVLSGFDPIRREIARMTLESLIQDGRIHPARIE
ELVEKNRLEMDQRIREYGEAAAYEIGAPNLHPDLIKIMGRLQFRTSYGQNVLRHSVEVGK
LAGILAGELGENVDLARRAGFLHDMGKAIDREVEGSHVEIGMEFARKYKEHPIVVNTIAS
HHGDVEPDSVIAVIVAAADALSSARPGARNESMENYIKRLRDLEEIANGFEGVQNAFALQ
AGREIRIMVQPGKVSDDQVVIMSHKVREKIEQNLDYPGNIKVTVIREMRAVDFAK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatattatattagcaatggtttgtgcactcattggtttgattattggttatgtg
gctatttcaatgaaaatgaaatcatcaaaagaagctgcagaactaactcttttaaatgca
gaacaagatgccgttgatttacgtggtaaagcagaaattgaagcagaacacatccgtaaa
gcagcggaacgtgaaagtaaagctcaccaaaaagaattacttttagaagcaaaagaagag
gctagaaaatatcgtgaagagatcgaaaaggaatttaaatctgatagacaagagttgaaa
cagatggaggcacgtttaacagatcgtgcatcatctcttgatcgtaaagatgaaaatcta
tctaacaaagaaaaaatgttagatagcaaagaacaaagtctaaccgataaatctagacat
attaatgagcgcgaacaggaaattgctactttagaaacaaaaaaagtagaagaattgtca
cgcatcgcagagcttagtcaagaagaagctaaagatatcattttagctgataccgaaaaa
gatttagctcatgatattgcgacacgtattaaagaagcagaacgggaagtaaaagatcga
tcaaacaagatagcaaaagacttgctagcccaagctatgcaacgtttagctggtgaatat
gttactgaacaaacaattacaactgttcatctccctgatgataatatgaagggacgtatc
attggtcgtgaaggacgtaatattcgtactctggaaagtttgacaggtattgatgttatc
atagatgatacgccagaagtcgttgtcttatcaggtttcgaccccattcgtcgtgaaatt
gctcgtatgactttagaatctttgattcaagatggacgtatccatccagctcgtattgaa
gagttggttgaaaaaaatcgtttggaaatggatcaacgtatccgtgagtatggtgaggca
gcagcttatgagattggtgcaccaaatctgcatcctgatttgataaaaattatgggacgt
ttgcagttccgtacatcatatggtcaaaatgtacttcgtcattcagttgaagttggtaaa
cttgcaggtattttagctggagaactaggagaaaatgttgatttagctcgtcgggctggc
ttcctccatgatatggggaaagctattgatcgcgaagttgaaggcagtcacgttgaaatt
ggtatggaatttgctcgtaagtacaaagagcatccgattgttgttaatactattgcaagc
caccatggtgatgtagaacctgacagcgttattgcagtaattgttgctgctgcagacgcc
cttagttcagcacgaccaggtgcgcgtaatgagtcaatggaaaattatatcaaacgtctg
cgtgatttagaagaaattgctaatggctttgagggagtgcaaaatgcctttgcacttcaa
gccggacgtgaaattcgtatcatggtacaacctggtaaagtttctgatgatcaagtagtt
attatgtcgcataaggtacgtgaaaaaatcgaacaaaacttggattatccaggtaatatt
aaggtaacagttattcgtgaaatgcgagctgttgattttgcaaaatag
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