Streptococcus agalactiae COH1: GBSCOH1_0704
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Entry
GBSCOH1_0704 CDS
T03434
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sagt
Streptococcus agalactiae COH1
Pathway
sagt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBSCOH1_0704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagt03019
]
GBSCOH1_0704
03009 Ribosome biogenesis [BR:
sagt03009
]
GBSCOH1_0704
Enzymes [BR:
sagt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GBSCOH1_0704
Messenger RNA biogenesis [BR:
sagt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GBSCOH1_0704
Ribosome biogenesis [BR:
sagt03009
]
Prokaryotic type
rRNA helicases
GBSCOH1_0704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDN66170
LinkDB
All DBs
Position
736952..738538
Genome browser
AA seq
528 aa
AA seq
DB search
MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIHTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA
HVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEARQTLLF
SATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTIIENLTKK
RMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALELATQYTPEELALY
VLSLTVQDPESLPEVEITREKPLPFKPSGGGFKGKGGRGNGRGGDRRRNDRGDRRGNRDR
DDRGGRRDFKRRDDKFKKDNRRQENKKPHKNTSSEKQTGFVIRNKGDK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaacttaacttatcgcaagatattctttcagcggtagaaaaagcaggc
tttgtagagccatcaccaatccaagaaatgactatcccacttgctcttgaaggcaaagat
gtcattggtcaagcgcagacaggtacaggaaaaactgcagcttttgggttaccaacttta
aataaaattcatactgaagataatactattcaagcacttattattgctcctacacgtgaa
cttgcagtacaatcacaagaagaattgttccgttttggacgcgataaaggtgttaaggtc
cgctctgtttatggtgggtcaagtattgaaaaacaaatcaaggcattacgttcaggagca
cacgttgttgttggaactccaggtcgattacttgatttaattaaacgtaaagcacttaaa
cttaatcacatcgaaactcttattcttgatgaagcagacgaaatgcttaacatgggattt
ttagaggacattgaagcaatcattagtcgtgtaccagaagcacgtcaaactcttttattc
tcagcgacaatgcctgatccaatcaaacgtatcggggttaaattcatgaaagatcctgag
catgttaaaattaaagcaactgaattaactaatgtgaatgttgatcagtattatgttcgc
gttaaggaaaatgaaaaattcgatactatgacacgtttgatggacgttgatcaaccagaa
ttgtcaattgtctttggacgtacgaaacgtcgtgtagatgaattaactcgtggtctaaaa
ttacgtggtttccgagcagaaggaattcatggagacttagatcaaaataaacgtcttcgt
gttatcagagactttaaaaatgaccatattgatattcttgttgccacagatgttgctgcg
cgtggtttagatatttcaggcgttacacatgtttacaactatgatattccccaagatcca
gaaagttatgttcaccgtattggacgtactggtcgtgctggtaaatctggtcaatctatc
acttttgtttcaccaaacgaaatgggatatttgacaattattgaaaacttaactaaaaaa
cgtatgactggaatgaagcctgctactgcaagcgaagcatttcaggctaagaaaaaagtt
gcattgaaacgtattgcacgtgactttgaggatcaagaattagtttctaaatttgataaa
tttaaagccgatgctttagaattagcaactcaatatacaccagaagaacttgctctttat
gtcttaagcttaacagttcaggatccagaatcgttaccagaagttgaaatcacacgtgaa
aaaccattaccatttaaaccatcaggtggtggctttaaaggtaaaggtggacgaggtaat
ggccgtggtggcgatcgtcgacgcaatgatcgtggtgatcgtcgtggaaatcgtgaccgt
gatgatcgtggaggtcgtcgtgattttaaacgtcgtgatgataagttcaagaaagataat
cgtcgtcaagaaaataaaaaacctcataaaaacacttcaagtgaaaaacaaactggattt
gttattcgcaacaaaggcgataaataa
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