Sagittula sp. P11: CDO87_00565
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Entry
CDO87_00565 CDS
T05219
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
sagu
Sagittula sp. P11
Pathway
sagu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDO87_00565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sagu03400
]
CDO87_00565
DNA repair and recombination proteins [BR:
sagu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDO87_00565
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CDO87_00565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
RsgA_GTPase
nSTAND1
DnaJ_CXXCXGXG
DUF4350
BCA_ABC_TP_C
nSTAND3
AAA_23
AAA_21
Motif
Other DBs
NCBI-ProteinID:
AUC51773
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All DBs
Position
complement(109194..112073)
Genome browser
AA seq
959 aa
AA seq
DB search
MPELKQIEVRGAREHNLKSIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESL
SAYARQFLDMMEKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARVGT
PYSPATGKPIEAQQVQDMVDRVMDMEEGTRAYLLAPIVRDRKGEYRKEFLELRKQGFQRV
KVDGTFYELDEPPTLDKKFRHDIDVVVDRVVVRDGMQTRLADSFRTALDLANGIAILETA
PKEGEPERMTFSENFACPVSGFTIPEIEPRLFSFNAPFGACPECDGLGVELFFDERLVVP
DQTLKIKDGALAPWRKGKSPYFIQTIDAIAKHYEFDKNARWKDLPAHVQQVFLYGSGEEE
IPFRYDEGGRIYNVTRTFEGVIPNMERRYRETDSSWVREEFERYQNNRPCGACSGYRLRE
EALAVKIGPSSDKEHLLHVGQVVQMSIRQAFDWCETVPANLTQQKNEIARAILKEIRERL
GFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNSRL
LDTLKNLRDQGNTVLVVEHDEEAIREADYVFDIGPGAGVHGGQVVSKGTPEEVQNDPASL
TGQYLSGAREIAVPTERRKGNKKKLKVVKATGNNLKEVTAEFPLGKFVCVTGVSGGGKST
LTIETLFKSASMALNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFT
PIRDWFAGLPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCETCKGK
RYNRETLEILFKGKSIADVLDMTVEDAQVFFKAVPSIRDKMDALMRVGLGYIKVGQQATT
LSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVDQGNTVVVIE
HNLDVIKTADWLIDIGPEGGDGGGEIVAVGTPEEVAEVERSHTGRYLKPMLEARKVAAE
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctgaagcagatcgaggtgcgtggcgcgcgcgagcacaatctgaaatcgatc
gacgtggatattccgcgggatcagctggttgtcatcaccggcctgagtggatcgggcaag
tcatcgctcgccttcgacacgatttatgccgaaggacagcggcgctatgtcgagtcgctc
tcggcctacgcgcggcagttcctcgacatgatggagaagcccgacgtcgaccacatcagc
ggtttgtcgccggcgatttccatcgaacagaagacgacctcgaagaacccgcgctcgacc
gtcggcacggtaacggagatctacgactacctccgcctgctgttcgcgcgcgtcggcaca
ccctattcgcccgccaccggcaagcccatcgaggcgcagcaggttcaggacatggtcgac
cgggtcatggacatggaggaggggacgcgcgcctatcttctggcgcccatcgtgcgcgac
cggaagggggagtaccgcaaggagttcctcgaactgcgcaagcagggcttccagcgggtc
aaggtggacggcacgttctacgaactggacgagccgccgaccctcgacaagaagttccgc
catgacatcgacgtggttgtggatcgcgtcgtcgtgcgcgacgggatgcagacccggctt
gccgacagcttccgcacggcgctggacctcgccaacggcatcgccatcctggaaaccgca
ccgaaggaaggcgagccggagcgcatgacgttctcggagaattttgcctgcccggtcagc
gggttcaccatcccggaaatcgagccgcggctgttttcgttcaacgccccattcggcgcc
tgtccggagtgtgacggcctgggtgtggagctgttcttcgacgagcggctggtggttccg
gaccagacgctgaagatcaaggacggcgcgttggcgccctggcggaagggcaagagcccg
tatttcatccagaccatcgacgccatcgccaagcactacgagttcgacaagaacgcccgc
tggaaggaccttccggcgcatgtgcagcaggttttcctgtacggctccggcgaagaggag
atcccgttccgttacgatgagggcggccgcatctacaacgttacccgcaccttcgagggt
gtcattcccaacatggaacggcgctaccgcgagacggattcgagctgggtccgcgaggag
ttcgaacggtatcagaacaaccgtccctgcggcgcctgcagcggctaccgcctgcgggaa
gaagcgctggcggtgaagatcggtccgtccagcgacaaggagcacctgctgcacgtcggg
caggtcgttcagatgtcgatccgccaggccttcgactggtgcgagacggtgcccgccaac
ctgacgcagcagaagaacgagatcgcccgcgccatcctgaaggagatccgcgaacgtctc
ggcttcctgaacaacgtgggtctcgaatacctgaccctcagccgcaacgccgggaccctg
tcgggcggcgaaagccagcgcatacgtctggccagccagatcggcagcggcctgaccggc
gtgctctacgtgctggacgagccgtccatcggcctgcaccagcgcgacaactcccgtctg
ctcgacacgctgaagaacctgcgcgaccagggcaacacggtgctggtggtggaacacgac
gaggaggcgatccgcgaggcagactacgtctttgacatcggccccggtgccggtgtgcac
ggcgggcaggtggtgtccaagggcacgcccgaagaggtgcagaacgaccccgccagcctg
acgggccagtacctctccggcgcgcgcgagatcgctgtcccgactgagcgccgcaagggc
aacaagaagaagctgaaggtggtcaaggcgaccggcaacaacctcaaggaggtgacggcc
gagttcccgctgggcaagttcgtctgcgtgaccggcgtgtccggcggcggcaagtcgacg
ctgaccatcgagacgctgttcaaatcggcctccatggcgctgaacggcgcgcgccagacg
cccgcgccctgcgagacgatcaaggggctggagcacctcgacaaggtgatcgacatcgac
cagcggcccatcgggcgcacccctcggtccaaccccgcgacctacaccggcgccttcacc
ccgatccgcgactggtttgccggtctcccggaggcgaaggcgcgcggttacaagcccgga
cggttctccttcaacgtgaagggcggccgctgcgaggcgtgccaaggcgacggtgtgatc
aagatcgagatgcacttcctgcccgacgtctacgtcacctgcgagacctgcaagggcaag
cgctacaaccgcgagacgctggaaatcctgttcaagggcaagagcatagccgacgttctt
gatatgacggtcgaagacgcgcaggtcttcttcaaggccgtgccgtcgatccgcgacaag
atggatgcgctgatgcgcgtgggcctcggctacatcaaggtcggccagcaggcgacgacc
ctttcgggcggcgaggcgcagcgcgtgaagctgtcgaaggaactggccaagcggtccacg
ggccgcacgctgtatatcctcgacgaacccacgaccggcctgcatttcgaggacgtgcgc
aagctcctcgaagtgctccacgaactggtcgatcagggcaacacggtcgtggtgatcgag
cacaacctcgacgtcatcaagactgccgactggctgatcgacatcggtcccgaaggcggc
gacggcggcggagagatcgtggccgtgggcacccccgaggaggtcgcggaggtggagcgc
agccacaccgggcgctacctgaagccgatgctcgaagcccgtaaggtggctgccgaatag
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