Sagittula sp. P11: CDO87_00980
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Entry
CDO87_00980 CDS
T05219
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sagu
Sagittula sp. P11
Pathway
sagu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDO87_00980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagu03019
]
CDO87_00980
03009 Ribosome biogenesis [BR:
sagu03009
]
CDO87_00980
Enzymes [BR:
sagu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CDO87_00980
Messenger RNA biogenesis [BR:
sagu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDO87_00980
Ribosome biogenesis [BR:
sagu03009
]
Prokaryotic type
rRNA processing factors
CDO87_00980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AUC55687
LinkDB
All DBs
Position
complement(197275..200418)
Genome browser
AA seq
1047 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAAADEEEDKPKKSSRSRSRKKSS
KPSTRSDSKSPKEPSGMETIDLGSEEDASENEAVAEAGAPGEGLSPMETVTEAPVGEPVD
SVESDGAETNATASAEADLPQFVMTEPAPVQETAEDPVAETPAEAAPETASETADTPADD
AHTSDAPAEQANDTTEVPAAEQETSEDEDDTNGSQRPMAADSRDDALVVTGEPGESDDED
DDDEDMGDDAASRDESIESVADDDTHEDIRPVRKPRARRYKIQEVIKVRQIMLVQVVKEE
RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNATDRSKLKAIANEIDVPKGAGLI
IRTAGAKRTKTEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYSREID
EVLVEGERGYRVAKDFMKMIMPSHAKNVKNYTDQMPLFARYQVESYLGGMFNPVVQLKSG
GYIVIGVTEALVAIDVNSGRATKEGSIEETAVKTNLEAAEEVARQLRLRDLAGLIVIDFI
DMDERKNNAAVEKKLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCSACH
GTGLIRSDDNMALQILRQIEEEGVRRRSREVLVKCPVGIANYLMNQKREHVAMIEARYGM
AVRIEGDPHLIAPDFSMEKFKTATRSVPEATAPVVSVDTSIMDAIDEAAEAEEIEADVEE
MEEQQSSGDDNGNDQGSDDKPKKKRRRRRRRSKSKDGDQSRDDQDDNGSNDGESDNGSGD
TDSGDDDSDAAEGGDTGGSDEDGQDSGKKSSSRSRSRSRSRSRTSKPKEPVEASSEGDAN
GDAPAEAVAMTANAPAPVEAEAAPEAPAAAEQTAEPVAETAPEEAPAEAPEKSAEPQPAA
APEAVSEDEKPKRARTRVKASDVIAQVVGSPVGGSAEAAVNAEPVEEPAAEAEPEAAPQP
EPETVGETAGDDDEPKKKKRGWWSLGR
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgccacccacgcggaagagacccgcgtcgtggtggtg
gacggaaacaaggtcgaggagttcgactttgaatcggaaaacaagcgtcagctagcgggc
aacatctacctcgcgaaagtcacgcgggtcgaaccgtcgctgcaggcggccttcgtcgat
tacggcggcaaccgtcacgggttcctcgcgttctcggagatccacccggattactaccag
atcccggtggccgaccgtcaggcgctgatggaggaggaggccgcactggccgccgccgcc
gatgaagaagaggacaagccgaagaagtcttcgcggtcgcggtcgcgcaagaagtcgtcg
aagccgtccacgcggtccgactcgaaatcgccgaaggaaccttcggggatggagaccatc
gacctcgggtccgaggaagacgcgtccgagaacgaggcggtggcagaggccggcgccccg
ggcgagggcctgtcgcctatggagaccgtgaccgaagcgcccgttggcgagccggtcgat
tcggtggaatccgacggtgcagagaccaatgcgaccgcttcggcggaggcggacctgccg
cagttcgtgatgaccgaaccggcccccgtacaggaaacggcagaggatcccgtggcagag
acgccggccgaggccgcaccggaaaccgcatccgaaaccgcggataccccggcggacgac
gcgcatacgtcggacgcaccggccgaacaggccaacgacaccacggaagtgccggcagcg
gagcaggagacctccgaggacgaggacgacaccaacgggtcgcagcgcccgatggcggcg
gattcgcgcgacgatgcgctggtcgtgaccggcgagccgggcgagagcgacgatgaggat
gacgacgacgaggacatgggtgacgacgcggcttcgcgcgacgaatccatcgaatccgtg
gccgacgacgacacgcacgaggacatccgtccggtgcgcaagccgcgtgcccgccgttac
aagatccaggaagtgatcaaggtccggcagatcatgctggtgcaggtggtcaaggaagag
cgcggcaacaagggcgcggcgctgacgacctacctgtcgcttgcgggccgttactgcgtg
ctgatgccgaacaccgcccggggcggcggcatttcccgcaagatcaccaacgccaccgac
cgctcgaaactgaaggccatcgccaacgagatcgacgtgccgaagggcgcgggcctgatc
atccggaccgcgggcgccaagcgcaccaagaccgagatcaagcgcgactacgaatacctc
cagcgcctgtgggagcagatccgcgaactgacgctgaagtcgatcgcaccggcgaagatc
tacgaggaaggcgacctgatcaaacgttcgatccgcgacctctacagccgcgagatcgac
gaggttctggtggaaggcgagcgcggctaccgcgtggccaaggacttcatgaagatgatc
atgccgtcccacgccaagaacgtgaagaactacaccgaccagatgccgctgttcgcgcgc
taccaggtcgaatcctacctgggcggcatgttcaacccggtggtccagctcaagtcgggc
ggctacatcgtcatcggcgtgaccgaggcgctggtggccatcgacgtgaactccggccgg
gcgaccaaggaaggctccatcgaggagaccgcggtcaagaccaacctggaggccgctgaa
gaggtggcgcgccagctgcgtctgcgtgacctcgccggtctcatcgtcatcgacttcatc
gacatggacgagcgcaagaacaacgccgccgtcgagaagaagctgaaggacaagctgaag
accgaccgcgcccgcatccaggtgggccgcatctcgggattcggcctgcttgagatgtcg
cgccagcgtctgcgtccgggcatgatcgaggcgaccacgcaaccctgttcggcctgccac
ggcaccggcctgatccgttccgacgacaacatggcgctgcagatcctgcgccagatcgag
gaagagggcgtgcggcgccggtcgcgcgaagttctggtgaagtgcccggtgggcatcgcc
aactacctgatgaaccagaagcgcgagcacgtcgccatgatcgaggcgcggtacggcatg
gccgtgcgcatcgagggcgacccgcatctgatcgcgcccgacttctcgatggagaagttc
aagacggcgacccgctccgtacccgaagcgaccgcgcccgtggtgtccgtcgacacctcg
atcatggatgccatcgacgaggcggccgaagccgaggagatcgaggcagatgtcgaggag
atggaggagcagcagtcctccggcgacgacaacggcaacgatcagggcagcgacgacaag
ccgaagaaaaagcggcgtcggcggcgtcgtcggtcgaagtccaaggacggcgaccagtcg
cgtgacgatcaggacgacaacgggtcgaacgacggcgagtcggacaatggctccggcgat
acggacagcggtgacgacgacagcgacgcggccgagggtggcgacaccggcggcagtgac
gaggacggtcaggacagcggcaagaagagctcgagccgctcgcggtcacgctcccgttcg
cgcagccggacgtccaagccgaaggagccggtcgaggcgtcttccgagggtgacgccaac
ggcgatgcgcctgccgaagcggtggccatgacggccaatgctccggccccggtggaggca
gaagccgcacccgaggccccggcagccgccgagcagacggccgagccggttgccgagaca
gccccggaagaggcccctgccgaggcgcccgaaaagtcggcggagccgcagcccgcagca
gcgccggaggccgtgtccgaggacgagaagccgaagcgtgcccgcacccgggtcaaggca
tctgacgtgatcgcgcaggttgtggggtcgccggtcggtggctcggcagaggccgcggtc
aacgcggagccggtcgaagagcccgccgccgaggcagagcccgaagccgcaccgcagccc
gaaccggaaacggttggcgagaccgcgggcgacgacgacgagccgaagaagaaaaagcgc
ggttggtggtcgctgggccgctga
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