Sagittula sp. P11: CDO87_04720
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Entry
CDO87_04720 CDS
T05219
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sagu
Sagittula sp. P11
Pathway
sagu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDO87_04720 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagu03019
]
CDO87_04720 (pnp)
03016 Transfer RNA biogenesis [BR:
sagu03016
]
CDO87_04720 (pnp)
Enzymes [BR:
sagu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CDO87_04720 (pnp)
Messenger RNA biogenesis [BR:
sagu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CDO87_04720 (pnp)
Transfer RNA biogenesis [BR:
sagu03016
]
Prokaryotic type
tRNA degradation factors
CDO87_04720 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
TP0873_N
Motif
Other DBs
NCBI-ProteinID:
AUC52536
LinkDB
All DBs
Position
complement(963543..965684)
Genome browser
AA seq
713 aa
AA seq
DB search
MFKEVKKTLQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKTQKEGQDFFPLT
VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGAPFMGPIAGARVGYEDGSYVLNPTVDDMHLLRDNPEQR
LDLVVAGTKDAVMMVESEAYELTEDEMLGAVMFAHEQIQPVIDLIIDLAEDAAKEPFDFT
PPDYSALFDVVKAAGEEKMKAAYAISDKQERVAAVAAVKEEIKAGLTEEQLADSNLGSAL
KKLESQVLRSDVVVNKRRIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVTTLG
TGDDEQMIDALQGTYKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEEDGSYG
ILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKTALAQAKEGRLHILGE
MSKAISEAGSFSEHAPRIETMNIPTDKIREVIGSGGKVIREIVEMSGAKVDINDDGVIKI
ASPNGDSIQKAYDMIYAIVAEPEEGHIYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETGEELAKEKEAEQAD
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaagaagtgaaaaagacactccagtggggcgaagagacgctgacactggaaacc
ggcaaggttgcgcgccaggcagacggcaccgtgatcgccaccctgggcgaaacgtcggtc
atggccaacgtgacctttgccaagacgcagaaggaagggcaggacttcttcccgctgacc
gtccactaccaggaaaaatactacgccgccggcaagatcccgggcggcttcttcaagcgc
gaggcgcgtccgaccgaaaaggaaacgctgaccgcgcgcctgatcgaccgtccgatccgt
ccgctgttcgtgcccggcttcaagaacgaagtgctggtgatgtgcaccgtgctgagccat
gacctcgtcaacgatcccgacatcgtcgcgatgatcgcggcctccgcggccctgacgatc
tccggcgcgcccttcatgggtccgatcgccggtgcccgcgtgggttacgaggacggctcc
tacgtgctgaacccgaccgtcgacgacatgcacctgctgcgtgacaacccggagcagcgc
ctcgacctcgtggttgcgggcaccaaggacgccgtcatgatggtggagtccgaggcctac
gaactgaccgaggatgagatgctgggcgccgtgatgttcgcgcacgagcagatccagccg
gtcatcgacctgatcatcgacctggccgaagacgcggcaaaagagccgttcgacttcacc
ccgccggattactcggctctgttcgacgtcgtgaaagcggcgggcgaagagaagatgaag
gccgcctatgcgatctccgacaagcaggagcgcgttgccgctgttgccgccgtcaaggaa
gagatcaaggccggtctgaccgaagaacaactggccgactccaacctcggctcggcgctg
aagaagctggaatcccaggttctgcgttccgacgtggtcgtcaacaagcgccgcatcgac
ggtcgtgcactggaccaggtccgctccatcgtgtcggaaaccggcatcctgccgcggacc
cacggttcggccctgttcacccgtggcgaaacgcaggcgctggtcgtgaccacgctgggc
accggcgacgacgagcagatgatcgacgcgctgcagggtacctacaagtccaacttcctg
ctgcactacaacttcccgccgtactcggtcggtgaagtgggccgcgtgggctccccgggc
cgtcgcgagatcggccacggcaagctggcatggcgcgcgcttcaggcggtgctgccggcg
gcgaccgacttcccctacaccatccgcgtggtgtcggagatcaccgagtccaacgggtcg
tcctccatggcgtccgtctgcggcggctccctgtccatgatggacgcgggcgttccgctg
aaggcgccggtggcaggcgtggccatgggcctcgtgctggaagaggacggctcctacggc
atcctgaccgacatcctgggcgacgaggaccacctcggcgacatggacttcaaggtcgcg
ggcaccgagaacggcatcacctcgctgcagatggacatcaaggtcgcgggcatcaccccc
gagatcatgaagaccgcgctggcacaggccaaggaaggccgcctgcacatcctcggcgaa
atgtcgaaggcgatctccgaggcgggttcgttctctgagcacgcgccgcgcattgagacg
atgaacatcccgaccgacaagatccgggaagtgatcggctcgggcggcaaggtcatccgc
gagatcgtggaaatgtccggtgccaaggtcgacatcaacgacgacggcgtgatcaagatc
gcctcgccgaacggtgactcgatccagaaggcctacgacatgatctacgcgatcgtcgca
gagccggaagagggccacatctacaagggcaaggttgtgaagatcgtcgatttcggcgcc
ttcgtgaacttcttcggcaagcgtgacggccttgtgcatgtcagccagatcgagaaccgc
cgcctgaaccatccgtcggacgttctgaaggaaggccaggaagtctacgtcaagcttctg
ggcttcgacgaccgcggcaaggtgcgccttgccatgaagatggtcgatcaggaaaccggt
gaagaactggcgaaggaaaaggaagccgaacaggctgactga
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