Sagittula sp. P11: CDO87_08080
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Entry
CDO87_08080 CDS
T05219
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sagu
Sagittula sp. P11
Pathway
sagu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDO87_08080 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sagu03021
]
CDO87_08080 (rpoC)
03400 DNA repair and recombination proteins [BR:
sagu03400
]
CDO87_08080 (rpoC)
Enzymes [BR:
sagu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDO87_08080 (rpoC)
Transcription machinery [BR:
sagu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDO87_08080 (rpoC)
DNA repair and recombination proteins [BR:
sagu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDO87_08080 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AUC53158
LinkDB
All DBs
Position
complement(1646027..1650280)
Genome browser
AA seq
1417 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLTEEEFLDAQDQYGMDAFT
ANIGAEAIREMLAAIDLESEAENLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGSPIIVPSQDMILGLYYVTIAREGMKGEGMVFASPEEVEHAL
TAGEVHLHANVKCRVKQIDEEGNEVWLRFDTTPGRVRLGQLLPLNAKAPFDLVNRLLRKG
DVQTVIDTVYRYCGQKESVIFCDQIMRMGFVEAFKAGISFGKDDMVIPDNKWTLVDETRE
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMNTISAKRYNEAGQEMEPNSVY
MMAHSKARGSVTQMKQLGAMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIRLNDCGTDRAITAQAAVNDGEVVSSLGERILGRT
AAEDLVHPLSGDIMVRHGELIDERLADMVEDSGLQTARIRSPLTCEAEEGVCATCYGRDL
ARGTKVNTGEAVGIIAAQSIGEPGTQLTMRTFHMGGVAQGSSRSFLEASQNGKIQFVHPS
LITNVAGEQIVMNRNMQIVIVNEQGEEIASHKVGYGSKVFVTDGQDIKRGEKLIEWDPYT
LPIIAEKDGMAKHVDLVNGLAVREETDDATGMTQKIVVDWRAAPKGNDLKPEIILVNGDG
EPVRNDAGNPITYPMSVDAILSCEDGQEVKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRITIEPTDENMEPKEYMIPKGKHIPVVEGDFVQ
KGDYIMDGNPAPHDILSIMGIEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
ILDSGDTTLLKGEHVDKMEFDEANAKAEKKGGRPASGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDTLIGLKENVIVGRLIPAGTGGATMKVRKIATDRDNVVIEARRE
EAEAAAALAAPAAAVEDDVVGGDEFDTLIVDTPESRE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaacccgttcaacccgctgaccccgcccaaggtctttgac
gagatcaaggtgtcgctggcgtcgccggagcggatcctctcgtggtccttcggcgagatc
aagaagccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgc
gcgcgcatcttcggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatg
aagtaccgcggcgtcgtctgcgagaagtgcggcgtcgaagtcacgctccagaaggtgcgc
cgcgagcgcatgggccacatcgagctggccgcgccctgcgcccacatctggttcctcaag
tcgctgccgtcgcgcatcggcctgatgctggacatgacgctgcgcgacctcgagcgcgtg
ctgtacttcgagaactacgtggtgatcgagccgggcctgaccgacctgacctacggccag
atgctgaccgaggaggaattcctcgacgcgcaggaccagtacggcatggacgccttcacg
gcgaacatcggtgccgaggccatccgcgagatgctcgcagccatcgacctcgagtccgag
gccgagaacctgcgcgccgacctcaaggaagccaccggcgaactgaagcccaagaagatc
atcaagcgcctgaaggtcgtggaatccttcctggaatccggcaaccgtccggagtggatg
gtcctgaccgtgatccccgtgatcccgccggaactgcgtccgctggtgccgctggacggt
ggccgctttgcgacctccgacctgaacgacctgtaccgccgcgtgatcaaccggaacaac
cgcctcaagcggctgatcgaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatcggtcgacgccctctttgacaacggccgccgtggccgcgtcatcacc
ggcgccaacaagcgtccgctgaagtcgctcagcgacatgctgaagggcaagcagggccgc
ttccgccagaaccttctgggcaagcgcgtcgacttctccggccgttcggtcatcgtgacc
ggcccggagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttc
aagccgttcatctactcgcggcttgaggcgaagggtctgtcgtcgaccgtgaagcaggcg
aagaagctggtcgagaaagagcgtcccgaggtctgggacatccttgacgaggtgatccgc
gagcacccggttcttctgaaccgcgcgcccacgctgcaccgtctgggcatccaggcgttc
gaaccgatcctgatcgaaggcaaggcgatccagcttcacccgctggtctgttcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgtcccgctgtccctcgaggcacag
ctggaagcgcgcgtcctgatgatgtcgacgaacaacgtcctgtcgcctgccaacggctcg
ccgatcatcgttccgtcgcaggacatgatcctcggtctctactacgtgaccatcgcgcgc
gaaggcatgaagggcgaaggcatggtctttgcctcccccgaggaggtcgagcacgcgctg
acggcgggtgaggtccacctgcacgccaacgtgaaatgccgcgtcaagcagatcgacgag
gaaggcaacgaagtctggctgcggttcgacaccacgccgggccgggtccgtctgggccag
ctcctgccgctgaacgccaaggcgcccttcgacctggtgaaccgtctcctgcgcaagggc
gacgtgcagaccgtcatcgacaccgtctaccgctactgcggccagaaggaatcggtgatc
ttctgtgaccagatcatgcgcatgggctttgtcgaggcgttcaaggccggcatctcgttc
ggcaaggacgacatggtgatcccggacaacaagtggacgctggtcgacgaaacgcgcgag
caggtgaaggacttcgaacagcagtacatggacggcctgatcacccagggcgaaaagtac
aacaaggtcgtggacgcctggtcgaagtgtaacgacaaggtcaccgaggcgatgatgaac
accatctccgccaagcggtacaacgaggccgggcaggaaatggaaccgaactcggtttac
atgatggcccactccaaggcccgtggctcggtcacgcagatgaagcagctgggcgcgatg
cgcggcctgatggcgaagccgaacggcgacatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttctcgagtacttcaactcgacccacggtgcccggaagggtctg
tccgacaccgctctgaagacggcgaactcgggttacctgacccgtcgtctggtggacgtg
gcgcaggactgcatcatccggctgaacgactgcggcaccgaccgtgcgatcaccgcgcag
gcggcggtcaacgacggcgaggtggtgtccagccttggcgagcgcatccttggccgtacc
gcggcagaggatcttgtgcacccgctttcgggcgacatcatggtgcgccacggcgagctg
atcgacgaacgccttgccgacatggtcgaggactcgggcctgcagacggcacgcatccgg
tctccgctgacctgcgaggccgaagagggtgtctgcgcgacctgctacggtcgtgacctt
gcacgcggcaccaaggtgaacaccggcgaagccgtcggcatcatcgcggcgcagtccatc
ggcgaacccggcacgcagctgaccatgcggaccttccacatgggcggcgttgcgcagggt
tcctcgcggtcgttcctcgaagcgtcgcagaacggcaagatccagttcgtgcacccgtcg
ctgatcaccaacgtcgcgggcgagcagatcgtcatgaaccgcaacatgcagatcgtgatc
gtgaacgagcagggcgaagagatcgcgtcgcacaaggtgggctatggttccaaggtcttc
gtgaccgacggccaggacatcaagcgcggcgagaagctgatcgagtgggacccctacacc
ctgccgatcatcgccgagaaggacggtatggcgaagcacgtcgacctcgtgaacggcctg
gccgtgcgcgaagagacggacgatgccaccggcatgacgcagaagatcgtggtcgactgg
cgcgccgcgccgaagggcaacgacctgaagccggagatcatcctggtgaacggcgacggt
gagccggtccgcaacgatgcgggcaacccgatcacctacccgatgtccgtggacgccatc
ctgtcctgtgaagacgggcaggaggtgaaggccggtgacgttgtggcgcgtattccgcgc
gaaggtgcgaagacgaaggacatcaccggcggtctgccgcgtgtggccgaactcttcgag
gcacgccgcccgaaagatcacgcgatcatcgcggagatcgacggctacgtgcgcttcggc
aaggactacaagaacaagcgccgcatcacgatcgagccgaccgacgagaacatggaaccg
aaagagtacatgatcccgaagggcaagcacatcccggtggtcgaaggcgacttcgtccag
aagggcgactacatcatggacggcaacccggcgccgcacgacatcctctcgatcatgggg
atcgaggcgctggcgaactacatgatcgacgaggtgcaggacgtctaccggctgcagggc
gtgaagatcaacgacaagcacgtcgaggtcatcgttcgccagatgctgcagaagtgggag
atcctcgacagcggcgacaccacgctgctgaagggcgagcacgtcgacaagatggagttc
gacgaggccaacgcgaaggccgagaagaagggcggccgtccggcatcgggcgaaccgatc
cttctgggcatcaccaaggcgtccctgcagacgcggtcgttcatctcggcggcctcgttc
caggagacgacccgcgtgctgaccgaggcttcggtgcagggcaagaaggacacgctgatc
ggtctcaaggagaacgtcatcgtgggccgtctgatcccggccggtacgggtggcgcaacc
atgaaggtccgcaagatcgcgacggaccgcgacaacgtggtgatcgaagcccgccgcgag
gaggccgaagcggccgccgcgctggctgctccggctgccgcagtggaagacgacgtggtg
ggtggcgacgagttcgacacgctgatcgtcgacaccccggaaagccgcgagtga
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integrated database retrieval system
