Sagittula sp. P11: CDO87_13260
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Entry
CDO87_13260 CDS
T05219
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sagu
Sagittula sp. P11
Pathway
sagu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDO87_13260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sagu03019
]
CDO87_13260
03009 Ribosome biogenesis [BR:
sagu03009
]
CDO87_13260
Enzymes [BR:
sagu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDO87_13260
Messenger RNA biogenesis [BR:
sagu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDO87_13260
Ribosome biogenesis [BR:
sagu03009
]
Prokaryotic type
rRNA helicases
CDO87_13260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AUC55866
LinkDB
All DBs
Position
complement(2746100..2748319)
Genome browser
AA seq
739 aa
AA seq
DB search
MIPALTDALTERGYDTLTPVQEAVTAPDADGRDLLVSAQTGSGKTVGFGLAIAPTLLGED
QAFGPAGTPLALVVAPTRELAFQVMQELRWLYEKTGAMVNSCVGGMDVRQERRFLERGTH
IVVGTPGRLCDHIRRGALDLSDVRAVVLDEADEMLDLGFREDLEFILQTAPAERRTLLFS
ATVSPVIGRIAEEFQKDAFRINTINKAKQHADIAYKALRVAQADSDHAIFNLLRFHDDES
AIVFANTRAQVNHLTARLHNRGLSVVSLSGELSQQERTHALQAMRDGRARVCVATDVAAR
GIDLPNLSLVIHADLPTNTESLLHRSGRTGRAGKKGISALIVPPKSVGKAERLLKWAKIT
AEWTVPPSAEDISARDEEKLLNDPSWQMGVPEEQAEFAARLLEAHGPEAVAAALVRMHLA
RHSAPEDLQSPDTPARRDTKSFGPSRWFALSAGRNDRAEARWLLPLILRATDLEKDAIGA
IRVQDTETFVEIAATRAAAFEGALGADGMLADNITARAVEGEPEFARRPSGPRRDDGFRK
GPKPHRGRGDDRDDRGARPDRKPRPPREDRPERTERAERPAPAPAAKSTPVSEAAPRAEA
SAAPAADAPRPKKPAARPEGRSEGKPAGKFTQRTEGKGYGKPNRERSDRDGPKKPYKPRT
TKDGDAAPAKPAYRSNASDPSQRMSRGPAKGPGKGPAKGPGKGSFKGTPKDGAKGPSKFK
GKTGGKPRPGGTEPPRRKG
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgattcctgccctgaccgacgcgctgaccgagcgcggttacgacaccctcacccccgtg
caggaggccgtgaccgcaccggacgccgatgggcgcgacctgctggtttcggcgcagacc
ggatcgggcaagacggtgggcttcggccttgccatcgcgccgacgcttctgggcgaggat
caggccttcggacccgccggcacgccgctggcgctggtcgtggcccccacccgcgaactg
gccttccaggtcatgcaggagctccgctggctgtatgaaaagaccggcgcgatggtgaat
tcctgcgtcggcggcatggacgtccggcaggagcggcgcttcctcgaacgtggcacgcat
atcgtcgtgggcacgcccgggcggctctgcgaccacatccggcgcggcgcgctggacctg
agcgacgtgcgcgccgtggtgctggacgaggccgacgagatgctggacctgggcttccgc
gaggatctggagttcatcctccagaccgccccggccgagcggcgcacgctgctgttctcg
gccacggtgtcgccggtcatcgggcgcatcgccgaggaattccagaaggacgccttccgg
atcaacacgatcaacaaggccaagcagcacgccgacatcgcctacaaggcgctgcgcgtg
gcgcaggcggattcggatcacgcgatcttcaacctgctgcgctttcacgacgacgaaagc
gccatcgtctttgccaacacccgcgcgcaggtgaatcacctgaccgcgcggctgcacaac
cgcggcctgtcggtcgtgtccctgtccggcgaactgagccagcaggaacgcacccacgcg
ctgcaggcgatgcgcgacgggcgggcgcgggtctgcgtggcgaccgacgtggcggcgcgg
ggcatcgacctgccgaacctgtcgctggtcatccacgccgatctgccgaccaacaccgaa
agcctgctgcaccgttcgggccgcaccggacgcgcgggcaagaagggcatatcggccctg
atcgtgccgccgaagtcggtggggaaagcggagcgcctcctgaaatgggcgaagatcacg
gcggaatggaccgtgcctccctcggcggaggatatctcggcccgcgacgaggaaaagctg
ctgaacgatccgtcctggcagatgggcgtcccggaagagcaggccgagttcgccgcccgc
ctgcttgaggcgcacgggccggaggcggtggctgccgcgctggtccgcatgcacctggcg
cgccattccgcgccggaagacctgcaaagccccgacacgcccgcgcgccgcgacaccaag
agctttggcccgagccgctggttcgcgctgtcggcgggccgcaacgaccgggcggaagcg
cgctggctgctgccgctgatcctgcgcgccacggatcttgaaaaggacgccatcggcgcg
atccgggtccaggacacggagacatttgtcgagatcgccgccacccgggctgccgccttc
gaaggcgcgctgggggccgacgggatgctggccgacaacatcaccgcccgtgccgtcgag
ggagagccggagtttgcgcgccgcccctccggcccgcgccgcgacgacgggttccgcaag
gggccgaagccgcatcgcggccgtggcgatgaccgggacgaccggggcgcccggccggac
cgcaagccgcgcccgccgcgcgaagaccgtcccgagcggaccgagcgggcggaacgccct
gcccctgcccctgccgccaaatccaccccggtgagcgaagccgcgccgcgggccgaggcc
tctgccgccccggccgccgacgcgccgcgcccgaagaagcccgccgcacggccggagggc
aggtccgaaggcaagccggcgggcaagttcacccagcgcaccgagggcaagggatacggc
aaaccgaatcgcgaacggtccgaccgggatggcccgaagaagccctacaagccgcgcacg
accaaggacggcgacgccgcgccggcgaaacccgcctaccgcagcaacgcctccgacccg
tcgcagcgcatgtcacgcggtccggcgaagggccccggcaaggggcctgccaagggtccg
ggcaaggggtcgttcaagggcacgccgaaggacggcgccaagggtccgtcgaagttcaag
ggcaagacgggcggcaagccgcgccccggcgggacggaaccgccgcgccgcaagggctga
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