Sagittula sp. P11: CDO87_13605
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Entry
CDO87_13605 CDS
T05219
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sagu
Sagittula sp. P11
Pathway
sagu03030
DNA replication
sagu03430
Mismatch repair
sagu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDO87_13605
03430 Mismatch repair
CDO87_13605
03440 Homologous recombination
CDO87_13605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sagu03032
]
CDO87_13605
03400 DNA repair and recombination proteins [BR:
sagu03400
]
CDO87_13605
Enzymes [BR:
sagu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CDO87_13605
DNA replication proteins [BR:
sagu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CDO87_13605
DNA repair and recombination proteins [BR:
sagu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CDO87_13605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AUC54146
LinkDB
All DBs
Position
2816641..2820141
Genome browser
AA seq
1166 aa
AA seq
DB search
MADPRFIHLRTHTEYSLLEGALRLKKLPGMCADMGMPAVAVTDTNNLFAALEFSVGAAGA
GVQPIIGCQIDLRYFEHAPGERIRPPAPVVLLAQTERGYEHLMKLNSCLYLRRDNELAHV
TLDELEAHSEDVICLSGGPDGPVGRLLRTNSRAAAQTLMTRLHSIFEDRLYVELQRHPGE
DGTPPEAEQLTERGFVEMAYEMGLPLVATNDVYFPKSTMYEAHDAMICIAEGAYVDQQEP
RRRLTPQHYLKTPQEMAVLFADLPEALENTVEIAKRCAFMAYRRDPILPRFADDEVTELR
RMANEGLQARLAVIPHAVPVEEYQKRLDFELGIIEGMGFPGYFLIVADFIQWAKDQDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIQYV
QQKYGHDRVAQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKMIPVEGVKPVSIEQALR
DEPRLAEEARNEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIADRPTDELVPLYRDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPLHVAADGTQLYEPPEGAE
NQINLIPLDDKVTYKLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQIAQEMAGYSLGGADLLRR
AMGKKIKEAMDAERPKFEQGAAKNGVEKKKATEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPWVPPCVNRSLATFDVVEGQ
LVYALGALKNVGLEAMKLVVEGRDGRPFSTVFDFARRVDLKKIGKRPLEMMARAGCFDVL
DPNRRRLFDSLDALVAYSAAIHEQKSSAQVSLFGEAGDDLPEPRLSPVSDWLPAERLAEE
FKAVGFYLSGHPLDDYMPALKRQDVVTLDEVMAKAERGPLVAKLAGVVAGRQERKSARGN
RFAFAQLSDPTGAYEVTLFSETLEKSREHLETGSKVVVTVEATMESDQLKLLGRAVMPVD
AAAAQGGPSGMRIFVDTEMALSQIASVLGRAAEQLPKAPRAPIVLRLAAPGLPGEVEMDL
SERFPVTPEIKGAVKSLDGVLAVEDF
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggcagatccgcgattcatccacctccgcacccacaccgaatattctcttctcgaaggc
gcgctccggctgaagaagctgccgggcatgtgtgccgacatggggatgcccgccgtggcg
gtcaccgacaccaacaacctgttcgccgcgctggaattttccgtgggcgccgccggggcg
ggcgtgcagccgatcatcggctgccagatcgacctgcgctatttcgagcacgccccgggc
gagcggatcaggccgccggcgccggtggtgctgctggcccagacggagcgcggctacgag
catctgatgaagctcaattcctgcctgtacctgcgccgcgacaacgagctggcgcatgtg
acgctggacgaactggaggcgcattcggaggacgtgatctgcctgtcgggcgggccggac
gggccggtggggcggcttctgcgcaccaattcgcgggcggcggcgcagacgctgatgacc
cggctgcattcgatcttcgaagaccggctgtacgtcgagctgcagcgccaccccggcgag
gacggcacgccgcccgaggcggagcaactgacggagcgcggctttgtcgagatggcctac
gagatgggcctgccgctggtcgcgacgaacgacgtctatttcccgaagtccaccatgtac
gaggcgcatgacgcgatgatctgcatcgcggagggcgcctatgtcgaccagcaggaaccg
cgccgccgcctgacgccgcagcactacctgaagaccccgcaggagatggcggtgctgttc
gccgacctgccggaggcgctggaaaacaccgtcgagatcgcgaagcgctgtgccttcatg
gcctatcgccgcgacccgatcctgccgcgtttcgccgacgacgaggtgacggaactgcgc
cgcatggcgaacgaggggctgcaggcgcgtctggccgtgatcccgcatgccgtgccggtg
gaggaataccagaagcggctcgacttcgagctggggatcatcgaggggatgggcttcccc
ggctacttcctgatcgttgcggatttcatccagtgggccaaggaccaggacatcccggtc
gggccggggcggggctcgggcgcggggtcgctggtggcctacgcgctgacgatcaccgac
ctcgacccgctccgctattcgctgctgttcgaacgcttcctgaacccggaacgcgtgtcg
atgcccgacttcgacatcgacttctgcatggatcgccgcgaggaggtgatccagtacgtg
cagcagaagtacggccatgaccgggtcgcgcagatcatcaccttcggcgcgctcctgtcg
aaggcggcggtgcgcgacatgggccgggtcctgcagatgccctacgggcaggtggaccgc
ctgtcgaagatgatcccggtggagggggtcaaacccgtgtccatcgagcaggcgctgcgg
gacgagccgcggctggccgaggaggcgcggaacgaggaggtcgtcgaccggctgctgaaa
tacgggatgcaggtggaggggctgctgcgcagcgccggcacgcacgcggcgggcgtggtc
atcgccgaccgccccacggacgagctggtgccgctctaccgcgacccgcgttccgacatg
ccggcgacgcagttcaacatgaagtgggtggagcaggccggtctggtgaagttcgacttc
ctcggcctgaagacgctgacggtgatccagaacgccatggacctgatcttcaagtccggg
cgcccgctgcatgtcgccgccgacggcacgcagctgtacgagccgccggagggggcggag
aaccagatcaacctgatcccgctggacgacaaggtcacctacaagctctatgcctcggcc
aagacggtggcggtgttccaggtggaaagctcgggcatgatggatgcgctcaagcgcatg
aagcccacctgcatcgaggacatcgtggcgcttgtggcgctgtaccgccccggcccgatg
gagaacatcccggtctattgcgaggtcaagaacggcctgcgcgagatcacgtccgtccac
ccgtccatcgaccacatcctggccgagacgcagggcatcatcgtttaccaggaacaggtg
atgcagatcgcgcaggagatggcgggctactcgctcggcggcgccgacctgctgcgccgc
gcgatgggcaagaagatcaaggaggcgatggacgccgaacggcccaagttcgaacagggc
gcggcgaagaacggggtggagaagaagaaggccaccgaggtcttcgaccttctggagaag
ttcgccaactacggcttcaacaagtcgcacgcggcggcctacgcggtggtcagctaccag
accgcgtggctcaaggcgaaccacccggtggagttcatggcgggcgtcatgaactgcgat
atccacctgactgacaagctggccgtctatttcgaggaggtccgcaaggggctgggcctg
ccgtgggtgccgccctgcgtgaaccgctcgctcgcgacgttcgacgtggtggaggggcag
cttgtctatgccctgggcgcactgaagaacgtgggcctcgaggcgatgaagctggtggtg
gaggggcgcgacgggcggccgttctcgaccgtcttcgactttgcccgccgcgtggacctg
aagaagatcggcaagcgtcctctggagatgatggcgcgggcgggctgtttcgacgtgctc
gacccgaaccgccggcggctgttcgattcgctcgacgcgctggtggcctattcggcggcg
atccacgagcagaagagctccgcccaggtgtcgctgttcggcgaggcgggcgacgatctg
ccggagccgcgcctgtcgccggtgtccgactggctgcccgccgaacggctggcggaggag
ttcaaggcggtgggcttctacctgtccggtcacccgctcgacgattacatgcccgcgctg
aagcggcaggacgtggtgacgctggacgaggtcatggccaaggccgagcgcggcccgctg
gtggccaagctggcgggcgtcgtggccggacggcaggaacgcaagtcggcgcgcggcaac
cgttttgcctttgcgcagctgtcggacccgaccggcgcctacgaggtcacgctgttctcc
gagacgctggagaagtcgcgcgaacacctcgagaccgggtcgaaggtcgtcgtcaccgtc
gaggcgacgatggagagcgaccagttgaaactgctgggccgggcggtgatgccggtggat
gcggcggcggcgcagggcggcccttcggggatgcggatcttcgtcgacacggagatggcg
ctgagccagatcgccagcgtgctgggccgcgccgccgagcagttgccgaaggcgccgcgc
gcgccgatcgtgctgcggctggcggcgccgggcctgccgggcgaggtggagatggacctt
tccgaacgcttccccgtcacgccggagatcaagggcgcggtgaaatcgctcgacggggtg
ctggcggtcgaagacttctga
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