Sagittula sp. P11: CDO87_15880
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Entry
CDO87_15880 CDS
T05219
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sagu
Sagittula sp. P11
Pathway
sagu03410
Base excision repair
sagu03430
Mismatch repair
sagu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CDO87_15880 (recJ)
03430 Mismatch repair
CDO87_15880 (recJ)
03440 Homologous recombination
CDO87_15880 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sagu03400
]
CDO87_15880 (recJ)
DNA repair and recombination proteins [BR:
sagu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CDO87_15880 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CDO87_15880 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDO87_15880 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Prok-RING_1
DinB_2
Motif
Other DBs
NCBI-ProteinID:
AUC54562
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All DBs
Position
3275048..3276793
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AA seq
581 aa
AA seq
DB search
MAYLGVESSLSGRRWVGPDVETERQAELLAQQTGLARPLCAILARLGVPPEEAQAYLEPK
LRDLLPDPRSLKDMEKAATRFLKAVSGRERIAVFADYDVDGGSSAALLIDWLRQMGRPAT
LYVPDRIDEGYGPNPTAMAGLAREHDLIVCVDCGTLSHDAIAAAEGADVVVLDHHLGGET
LPDCVAVVNPNRQDEDGGLAHLCAAAVVFLMLVEAGRQLREAGARGPDLMKMLDLVALAT
VADVAPLRGVNRALVQQGLKVMGRRERVGLVALSDVARLERAPEAYHLGFVMGPRVNAGG
RIGQADLGARLLASDNPAEAQAMAERLEALNAERREIEAAVRAAALDQAEARGLDAPLIW
AAGEGWHPGVVGIVASRLKEHTGRPSVVIGLDGAEGKGSGRSVAGVDLGASVQRLAAEGL
LIKGGGHRMAAGLTVARDRLEEAMARLSDLLEKQGAGAGGAADLRVDGVLMPGAAQVDLV
EDLERAGPFGQGAPGPRFVVPDVRLSFAKVVGSGHLKITCGDGLGARLEAICFNAMDGPL
GQVLLNHEGRRFHLAGKLDVNTWQGRHTVQMRLDDAAPAAD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
ttggcgtatctgggtgtagagagcagcctctcggggcggcgttgggtcggaccggacgtg
gaaaccgagcgtcaggcggagcttctggcgcagcagaccggactggcccgtcccctctgc
gcgatcctcgcgcggctgggtgttccgccggaggaggcgcaggcctacctggagccgaag
ttgcgcgacctgctgcccgacccgcggtcgctcaaggacatggagaaggcggccacgcgg
ttcctgaaggcggtctccgggcgcgaacggatcgcggtgtttgccgattacgacgtggac
ggcggatcctcggccgccctgctgatcgactggctgcggcagatggggcggccggcgacg
ctgtatgtgcccgaccggatcgacgagggctatgggccgaacccgaccgccatggcgggg
ctggcccgcgagcatgacctgatcgtctgcgtcgattgcgggaccttgtcgcatgacgcc
atcgccgcggccgagggggcggatgtggtggtgctggatcaccaccttggcggcgagacg
cttcccgactgcgtggcggtggtcaaccccaaccggcaggacgaggacggcgggctcgcg
catctctgtgcggccgcggtggtcttcctgatgctggtcgaggcggggcggcaactgcgc
gaggcaggcgcgcgcgggccggacctgatgaagatgctcgacctcgtggcgctggcgacg
gtcgccgatgtggcgccgctccggggcgtgaaccgggcgcttgtccagcaggggctgaag
gtcatggggcgcagggagcgcgtcggcctcgtggcgctttctgacgtggcacggctggag
cgcgcgccggaggcttatcacctgggatttgtcatggggccgcgggtcaacgccggtggg
cggatcgggcaggccgaccttggcgcgcggcttctggccagcgacaacccggccgaggcg
caggcgatggcggaacggctcgaggcgttaaacgcggaacggcgggagatcgaggcggcg
gtgcgtgcggcggcccttgatcaggccgaggcgcgcgggttggatgcgccgctgatctgg
gccgcgggcgagggatggcacccgggggtcgtcggaatcgtcgcctcccgcctgaaggag
cacaccggtcggccctccgtggtcatcggcctcgacggggcggagggcaagggctccggt
cgctccgtcgcaggggtggacctcggcgcctcggtgcagcggctggcggcggaggggctg
ctgatcaaggggggcgggcaccgcatggcggcaggcctcaccgtggcgcgcgaccggctg
gaggaggccatggcgcgcctctccgacctgctggagaagcagggggccggggcgggcggc
gcggcggacctgcgggtcgacggcgtgttgatgcccggtgccgcgcaggtcgacctggtg
gaggatctggagcgcgccggaccgttcgggcagggcgcccccggaccgcgattcgtcgtg
ccggacgtgcggctgtcctttgccaaggtcgtggggtcggggcatctgaagatcacctgc
ggagacggcctcggggcccggctggaggcgatctgtttcaacgcgatggacggccccctg
gggcaggtgctgctgaaccacgagggtcggcgctttcacttggcgggcaagctggacgtg
aacacgtggcagggccggcatacggtccagatgcggctcgacgatgccgcgcccgcggcg
gattga
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