Salinimicrobium tongyeongense: JRG66_02260
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Entry
JRG66_02260 CDS
T08572
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRG66_02260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sahn03019
]
JRG66_02260
Enzymes [BR:
sahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JRG66_02260
Messenger RNA biogenesis [BR:
sahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JRG66_02260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
AAA_19
CMS1
ERCC3_RAD25_C
P-loop_SecA
Helicase_C_2
Utp25_C
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
UZH55731
UniProt:
A0ABY6NS43
LinkDB
All DBs
Position
522477..523673
Genome browser
AA seq
398 aa
AA seq
DB search
MSFKKLDLDEALLKALDTQGYTRPTPIQKQAIPVVLSGKDLLGVAQTGTGKTAAFGLPIL
QLLNEKKFSGKAVRALILTPTRELAIQIDESLAAYGKYTRLKHSVIFGGVSQHAQVDKLK
RGVDILVATPGRLLDLMNQGFINLKSLEIFVLDEADRMLDMGFIHDVKKVIKSLPERRQT
LFFSATMPEEIQSLAKMMLKNPVKVEVTPPSSTVDKIDQWVYFTNKPDKRKLLLHLLETN
GIKTALVFTRTKHGADKVARFLDKAKISSAAIHGNKSQNARQKALKNFKNGNLNVLVATD
IAARGIDIDELGHVFNFDLPNVPETYVHRIGRTGRAGNEGIAISFCAADERKELKDIEKL
ASIKIPVVEEHPYPMDLNAAPPAPSPQRNRNGRQRRRR
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttaaaaaattagatttagatgaggcccttttaaaggcgctcgacacccaaggt
tataccaggcccaccccaattcaaaaacaggccattcccgtagtcctttcaggaaaagac
cttttgggggtagcgcaaaccgggacaggaaaaacagccgcttttggccttcctatcctg
caactattaaatgaaaaaaaattttcgggcaaggcagtgcgggctttgatcctcacgcct
acccgcgaactcgccatacaaatagatgaaagccttgctgcctacgggaaatacaccagg
cttaaacattcggtgatttttggcggggtaagccagcatgcccaggtagacaagctgaaa
cgcggcgttgacattcttgttgccacgcccggccgcttactcgaccttatgaaccagggc
tttatcaatctcaaatcgctggaaatattcgtactcgatgaagccgaccggatgctggat
atgggctttatacacgatgtaaaaaaggtcataaaaagcctgcccgaaagaaggcagacc
cttttcttttcggctaccatgcccgaggagatccagagcctggcaaaaatgatgctgaag
aatccggtaaaggtagaagttactccgccgtcatctacagtagataaaattgaccagtgg
gtttactttaccaacaaacccgacaaaagaaaattgctactgcaccttttggaaaccaat
ggaattaaaaccgcccttgtctttacccgcaccaaacacggtgccgataaagtggcgagg
tttcttgataaagccaaaataagttcggccgccattcacgggaataagagtcagaacgcc
aggcaaaaggctttgaagaatttcaagaacggaaacctgaatgtgcttgtagccaccgat
attgccgcccgcggaattgacatcgatgagctgggccacgtctttaactttgacctgccc
aacgtgcccgagacttacgtgcacagaattgggcgtaccggccgcgcggggaacgaggga
attgcaatttctttttgtgccgccgatgagcgaaaagaactgaaggatattgagaaactt
gcctccattaagatcccggtggttgaagaacacccttatcccatggacctcaatgctgcc
ccaccagccccttccccacaaagaaaccggaacggcaggcaaaggagaagacgttaa
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