Salinimicrobium tongyeongense: JRG66_02425
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Entry
JRG66_02425 CDS
T08572
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRG66_02425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sahn03019
]
JRG66_02425
03400 DNA repair and recombination proteins [BR:
sahn03400
]
JRG66_02425
Enzymes [BR:
sahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JRG66_02425
Messenger RNA biogenesis [BR:
sahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JRG66_02425
DNA repair and recombination proteins [BR:
sahn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JRG66_02425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
HTH_Cmi2_C
Fervidolysin_NPro-like
Motif
Other DBs
NCBI-ProteinID:
UZH55762
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All DBs
Position
554373..556277
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AA seq
634 aa
AA seq
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MSSPEDILKQYWGFDSFRPLQKDIIEHLLRKQDVIALLPTGGGKSLCFQVPALIQPGICI
VVSPLVALMEDQVKALQAKNIKAMALTGGIPFMEVDTMLDNCIFGNYKFLYLSPERLQQE
LVQERIKQMQVSLIAVDEAHCISQWGHDFRPAYRNISLLRHLKPQANVVGLTATATLPVV
KDIAQQLELKDVKLLQKSFRRENLAYLVKEAEDKNYYMEQLLREHDEAGIIYVRSRKATI
ELEQFLLKKGISATSFHGGLPKPEKSLRLQQWLKEEKRVMVATSAFGMGIDKANVRTVVH
LNLPESLESYFQEAGRAGRDGKPAKAVVLTNKSDIPLLKNQFLATLPGVEMVKLVYKKLN
SYFRIAYGEGEGTEHYFNFYQFCQKYELNTLLAYNTMLLLDRMSILSLTEQFQKKTRIRF
LVSGKQINWYLEANPQFDPVVKAILRTYGGAFDSMVEINIQVIAGKAGTTVQEAVKLLQQ
LQKEDMVDFEHDQHDTKIMFLIPREDDISINPLIPYIKLQERTKKEKIEQVLAYVENDRL
CKSEQLLQYFGEKDTQPCGICSVCRPSKKPLNREGMKKIYFAIIGLLEEQEYSSREMVAK
LDFPEDHIIKVLQVLVEKGALTLTPSNKYKLKHL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
ttgagtagccccgaagacatattaaagcaatactggggctttgacagctttagaccgctg
caaaaagacattattgaacacttacttcggaaacaggatgtcatcgccctgctgcccacc
ggcggcggcaaatcgctttgtttccaggtgcccgccctcatccaacccggaatttgcata
gtggtctcgcccctggtggccctcatggaagaccaggtgaaggccctgcaggcaaaaaac
atcaaagccatggccctcaccggcgggattccctttatggaagttgataccatgctcgat
aattgcatcttcggaaattacaagttcctctacctctcccccgaaaggctacagcaggaa
ctggtgcaggaacgcatcaaacaaatgcaggtaagcctaattgccgtagacgaggctcat
tgtatttcccagtggggtcacgattttaggccagcttaccgcaatatttctttgttgcgg
catttaaaaccacaagcaaacgtggtggggttaacggccacagcaacccttccggttgta
aaggatattgcgcagcaactggaactaaaggatgtaaaactgcttcagaaatccttccga
agagaaaatctggcctatcttgtaaaagaagccgaagacaagaattattacatggagcaa
ttgctccgggagcacgacgaagccggaattatttatgtgcgctcccgaaaggccaccata
gaacttgaacagttcctgctcaaaaagggcatttctgcgacctctttccacggcggactc
ccaaagccagaaaaatctttgcgcctccaacaatggctgaaggaagaaaaacgggtgatg
gtagcaaccagtgcctttggaatgggcatagataaagccaatgtgcgtaccgtagttcat
ttgaacctgcccgagagcctggaaagctattttcaggaagccggaagggccggaagggat
gggaaacctgccaaagcagttgttctaaccaacaagagtgacattcccctgcttaaaaat
cagtttttggccacgcttccgggcgttgaaatggtaaagctggtctataaaaaactgaat
tcctacttcaggattgcttatggcgaaggtgaaggcacagagcactatttcaatttttac
cagttttgccaaaagtacgaattgaacacactgcttgcctacaacaccatgctgctgctc
gacaggatgagcatactcagccttaccgagcaatttcagaagaaaacgcgaattaggttt
ttggtttcaggaaaacagatcaactggtacttggaagcaaatccgcagtttgacccggtg
gtaaaagccattttacgcacctacggcggggcttttgacagtatggtagaaattaatatt
caggtaatagcaggaaaagcgggaaccacagtacaggaagcggtaaagctgctgcaacag
ctgcaaaaagaagatatggttgattttgaacacgatcaacacgatacaaagatcatgttt
ttgatcccccgcgaagatgacatcagcatcaacccgctaataccttatattaaactacag
gaacgtaccaagaaggagaagattgagcaggtgctggcctatgttgagaatgacaggctg
tgtaaaagtgaacaactgttgcagtattttggggaaaaagatacccagccctgcggaatt
tgttctgtttgccgcccctcaaaaaagcccctaaaccgcgaaggcatgaaaaagatctat
tttgccattattggcctgctggaagagcaggagtattcttcgcgggagatggtagcaaaa
ctcgattttccggaagatcacatcatcaaggtcttgcaggtactggttgaaaaaggagcc
ctaactcttactccttctaacaaatacaaactaaaacatttatga
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