Salinimicrobium tongyeongense: JRG66_03740
Help
Entry
JRG66_03740 CDS
T08572
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JRG66_03740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sahn03021
]
JRG66_03740 (rpoC)
03400 DNA repair and recombination proteins [BR:
sahn03400
]
JRG66_03740 (rpoC)
Enzymes [BR:
sahn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JRG66_03740 (rpoC)
Transcription machinery [BR:
sahn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JRG66_03740 (rpoC)
DNA repair and recombination proteins [BR:
sahn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JRG66_03740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
BSH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
UZH55996
UniProt:
A0ABY6NTU3
LinkDB
All DBs
Position
complement(858565..862866)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARNNDKNTVQRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEDGSPLKKMDFLTEEEYLNILDTLPQENLY
LDESDPNKFIAKMGAECLIDILQRIDLDSLSYELRHKANNETSKQRKTEALKRLQVVEAL
RDANKNRENRPEWMIMKVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKFYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLGSHNILNPANGSPVTVPSQDMVLGLYYMTKSRKSTEER
PVKGEGLTFYSPEEVVIAYNQKMVELNAIIKIRTKDFNEAGELVYQIIETTVGRVLFNQA
VPEKAGYINEVLTKKSLRDIIGNILKVTSVPETAEFLDAIKEMGYGYAYRGGLSFSLGDI
IIPAEKQSMIDEANQQVEGIIGNYNMGLITNNERYNQVIDIWTSTNAGLTELAMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTSGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINEEDCGTLRGVDVAPLKKNE
EIVESLGERILGRTALHDVYNPLTNELLVASGVEIDEEIVKKITDAPIESVEVRSALTCE
AKKGICVKCYGRNLATNKTVQKGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LIAKFPGIAEIEDLKTVTGEAPDGSEAEIVISRTSELKLKDEKSGIVLSTSNIPYGSQIF
IKNGDKVSKDDIVCQWDPYNGVIISEFAGKIKYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLQILGKKDEVIRSYNLPVGAHLMVDNDEKIGVGKILVKIPRKSSKSGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKLGEVKKYLVKLSNQILV
QENDYVRAGMPLSDGSVTPEDILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIVDPGDTIFLENQLVHKDDFTEENDEIFGMKVVEDAGDSENLKPGQLVTPREL
RDENSILRREDKNLVTAREVIPATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDELEGLKENVIVGHRIPAGTGLREYEHIIVGSKEEFDEMLEKKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggctagaaataatgataagaatacagtacagaggtttaacaagatctctataggttta
gcttctcctgagtcgattcttgccgaatcacgcggggaggtcctaaagcctgaaactatc
aattatcgtacgcacaaacccgagagggatgggcttttctgtgagcgtatttttggtcct
gtaaaggattatgagtgtgcctgcggaaagtacaaaaggattcgctacaaagggatcgtg
tgtgatagatgtggtgtagaggtgactgaaaagaaagtgcgtagagatcgcgtggggcat
atcaaccttgtggttcctgtggcacacatctggtacttccgttctttaccaaacaaaatt
ggttacctgttaggtcttccttccaagaagttagacatgattatttactacgagagatac
gtggtaattcagccgggtattgccaagaatgaagatggatcgccgttgaagaagatggat
ttccttaccgaagaagagtacttgaacattctcgatacccttccgcaggaaaacctttac
ctggatgaaagcgacccgaataaatttatcgctaaaatgggtgcagaatgtcttatcgat
atcctgcagcgcattgaccttgattccctttcttatgagttgaggcataaagcgaacaac
gaaacttccaagcagcgtaaaactgaagctcttaagagacttcaggtggtggaagcactt
cgtgatgcaaataagaaccgcgaaaaccgtcctgagtggatgatcatgaaagtaattcca
attattccgccggaattgcgtccgttggtgccgcttgatggagggcgtttcgcgacttca
gatcttaacgacctttatcgtcgtgtgattatccgtaacaaccgtttgaagagattgatg
gagatcaaagctcctgaagtgatccttcgtaacgagaagcgtatgcttcaggaatctgta
gattctttgtttgataacacccgtaaatcttccgcagtaaaaactgattccaacaggccg
ttgaaatccctttctgattccttaaaaggaaaacaggggcgtttccgtcaaaacctgctt
ggtaagcgtgtagattattcggcacgttcggtaattgttgtggggcctgaactaaagttc
tacgaatgtggtcttccaaaagacatggcagccgagctgtacaaaccttttgtgattaga
aaactgatcgaaagaggtattgttaagaccgtaaagtctgccaagaaaattatagataag
aaagaacctgttgtttgggatattcttgagaacgtgttgaaagggcaccctgtgttgcta
aaccgggccccaacccttcacaggcttggtatccaggcattccagcctaaacttattgaa
ggtaaggcgatccagttacacccattggcgtgtactgcattcaacgccgactttgatggg
gatcaaatggcggttcaccttccgctaggcccagaggctatcctcgaggctcagctgtta
atgttaggttctcacaacatccttaacccggctaacggttctcctgtaactgttccttct
caggatatggtgcttggtctttattatatgaccaagtcaaggaaatctaccgaagaaagg
ccggtaaaaggggaaggccttactttctattctcccgaagaggtggttattgcttacaac
cagaaaatggttgaacttaatgccattatcaagataaggacaaaagatttcaatgaagcc
ggagaacttgtgtaccagatcattgaaacaaccgtgggaagagtattgtttaaccaggca
gtacccgaaaaagccggatatatcaatgaagtacttactaaaaagtcgcttcgtgatatc
atcggaaacatcctgaaagtgacaagtgttcctgaaactgccgaattccttgatgctatt
aaggaaatgggttatggttacgcttatcgcggtggtctttccttcagccttggagatatc
atcattcctgcagagaagcagagcatgatcgatgaagccaaccagcaggtagaaggtatt
attggcaactataacatgggtcttatcacaaacaacgaacgttataaccaggttattgat
atctggacttcaacgaacgccggcttaacggaattggccatgaagcgtattcgtgaagac
cagcagggatttaactctgtgtttatgatgcttgactccggtgcgaggggatctaaagaa
cagatccgtcagttaaccggtatgcgtggattgatggccaagcctaaaaaatctacttca
ggaggtggtgaaattatcgagaaccctattctttctaactttaaggaaggtctttcgatt
cttgaatactttatctctactcacggtgcccgtaaaggtcttgccgatacggctcttaaa
actgccgatgcaggttacctaacccgtcgtttggttgacgtgtctcaggatgtgatcatt
aacgaagaagattgtggtactttaaggggtgtagacgtagcaccattgaagaagaacgaa
gagattgtagaatcacttggagagcgtattcttggtagaacagcacttcacgatgtgtac
aatcctttaaccaacgaattgcttgtagcttcgggggttgagattgacgaagagatcgtg
aagaagatcaccgatgcgccaattgaaagcgtagaagtgaggtctgcacttacctgtgag
gccaaaaaaggtatttgtgtgaaatgttacggccgtaacctggctaccaataaaacggta
caaaaaggtgaagcggttggagttgtagctgcccagtctattggagagccgggtacccag
cttacccttcgtaccttccacgtgggtggtattgcaggaaacatttctgaagagaataaa
ttgatcgcgaagttccccggtattgcagagatcgaagaccttaaaactgttacaggagaa
gctcctgatggtagtgaggccgagatcgtgatctccagaacttcagaattgaaattaaaa
gatgagaaatccggaatcgtacttagtacaagtaacattccttatggatctcaaattttc
ataaagaacggagacaaagtttccaaagacgatatagtttgccagtgggatccttataac
ggggtgatcatttcagaatttgccggtaagatcaagtatgagaatatcgagcagggggtg
acttaccaggtagagatcgatgagcagaccggattccaggaaaaagtaatttctgaaagc
cgtaacaaaaagctcatcccaacgctacagatccttggaaagaaagacgaggtaattcgt
tcttacaaccttcctgttggagcccaccttatggtagacaacgatgagaaaattggtgta
ggtaagattcttgtgaaaattccacgtaaatcttccaagtctggggatattacgggaggt
cttccaagggtaaccgagcttttcgaagcccgtaacccatcgaaccctgccgttgtaagt
gagattgacggagttgtttccttcggaaagatcaaacgtggtaaccgcgagatcattatc
gaatctaaacttggagaagttaagaagtatcttgtgaagctttctaaccagatccttgtt
caggagaatgactacgtacgtgccggaatgccactttctgacggatctgtaactcctgaa
gacattcttgcaattaaaggcccaagtgctgtacaacagtaccttgtgaacgaagttcag
gaagtttatagactacagggagtgaagatcaacgataagcactttgaggtagttgtaaga
cagatgatgcgtaaagtaagaatcgtagatccgggtgatactatcttccttgaaaaccaa
ttggtgcacaaggatgacttcaccgaggagaacgatgagatctttggaatgaaagtggtt
gaagacgccggagattcagagaacctgaaaccggggcaacttgttactccacgtgagttg
agggatgagaattctatccttagaagagaggacaagaatcttgttactgcaagggaagta
attcctgcaacagcaactccggtactacagggtattacccgtgcgtcactgcaaaccaag
tcatttatttctgcggcatccttccaggaaactacgaaagtacttaacgaagcagctgta
agtggtaaggttgatgaactcgaaggactaaaagaaaatgttattgttggtcacagaatc
cctgccggtacaggtcttcgtgagtacgaacatatcattgttggttctaaagaagaattt
gacgaaatgcttgagaaaaagcaggaagtaaattataactaa
DBGET
integrated database retrieval system
