Salinimicrobium tongyeongense: JRG66_11310
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Entry
JRG66_11310 CDS
T08572
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRG66_11310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sahn03019
]
JRG66_11310
03009 Ribosome biogenesis [BR:
sahn03009
]
JRG66_11310
Enzymes [BR:
sahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JRG66_11310
Messenger RNA biogenesis [BR:
sahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JRG66_11310
Ribosome biogenesis [BR:
sahn03009
]
Prokaryotic type
rRNA helicases
JRG66_11310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UZH54559
LinkDB
All DBs
Position
complement(2574582..2576408)
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AA seq
608 aa
AA seq
DB search
MNNFELLGLNDALLQAIKDMGFESPSEVQEKAIPILLQEDTDMVALAQTGTGKTAAFGFP
LIQKINVDSRKTQGLILSPTRELCLQITNELKNYSKYFKGLNTVAIYGGASITDQAAQIK
KGAQIIVATPGRMQDMVNRKLVDISAIQYCVLDEADEMLNMGFYEDITEILSHTPSEKST
WLFSATMPKEVATIAKKFMRTPIEITVGTKNMGTSNVSHEYYIVNARDRYAALKRLADAN
PDIFSVIFCRTKRDTQKVAEQLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVSKSEVRKIKGIERI
IGQSFERKEIPDGREICEVQLFHLANEISKTEINHEIDKYLPSIAELFEGLSKEELLKKF
FSVEFTRFFNYYNNAQDLNAKASNDNYEDEGDSTRFFINVGAKDDFDWMSLKDFLKATLD
LGRDDINRVEVKDSFSFFNVASSKAEEVLRIFQDFKHQGRHINVEVTKKSAGKERSGRKG
GFKGKDKGGRGFEKSSKGADKGRRRSSDAPSGGRRRSADAAGGSRKGKKSGSRSSSIENS
IKRRRSKK
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttgaattattaggattgaatgacgccctgttacaggcaattaaagacatg
ggttttgaaagcccgagcgaagtacaggaaaaagcaatcccaattttactgcaggaagac
acagacatggtggcccttgcacaaaccggaaccggaaaaaccgcagcatttggttttccg
cttatccaaaaaatcaatgtagacagcagaaagacacagggccttattctgtcaccaacc
cgtgagttgtgtttacagatcaccaacgaattaaagaattacagcaaatactttaaaggc
cttaataccgtagccatctatggcggtgccagcattaccgaccaggctgcgcaaattaaa
aaaggagcccagatcattgttgccactcccggccgtatgcaggatatggtaaacagaaag
ctggtagacatttcggcaattcaatattgtgtactagacgaggccgatgaaatgctgaac
atgggcttttatgaagatattaccgagatcctctcgcatacgccttcagaaaagagcacc
tggttattttcggctaccatgccaaaagaggttgccactattgccaaaaaatttatgcgt
actcctatagaaatcactgtaggaaccaagaacatgggaacatcaaatgtttctcatgaa
tactatattgttaatgcccgtgaccgttatgcggcccttaaaaggcttgcagacgcaaac
cccgatattttctcggttattttctgccgcaccaaacgcgatacccaaaaagtggccgag
cagttaattgaagacggctacaacgctgcagcccttcacggcgacctgagccagaaccag
cgtgacctggtgatgaagagctttagggcgaggcaaatccagatgctggtagctaccgat
gtggctgcacgcggaattgacgttgacgatattacccatgtgatcaactaccagttgccc
gatgagatcgaaacctatacccacaggagtggccgtaccggtagagccggaaaaagcggg
gtttctatggttattgtttccaaaagtgaagtaagaaagatcaaaggtattgagcgtatc
attggccagtcgtttgagcgaaaagaaattcctgacggaagggagatctgcgaagtacag
ctgttccaccttgccaacgagattagcaagaccgagatcaaccacgagatcgataaatat
ttacccagcatagccgaactttttgaaggcctttcaaaagaagaattgctgaaaaaattc
ttttcggtagaatttaccaggttcttcaactactacaacaacgctcaggaccttaacgcc
aaggcctctaacgacaattatgaagacgaaggtgacagcaccaggttctttattaatgta
ggggctaaagacgattttgactggatgagcctgaaagacttcttaaaggcaaccctagat
cttggaagggatgatattaaccgcgtggaggtaaaagacagcttctcgttctttaatgta
gccagctcaaaggccgaagaggtacttcgcattttccaggattttaagcaccagggcaga
cacataaatgtggaggttaccaagaaaagtgccggaaaagaacgcagcggccgcaaaggc
gggttcaaaggaaaagacaaaggaggccgcggttttgaaaaatcatcaaaaggagccgac
aaaggcagaagaagatcatctgacgccccttcgggaggccgaagaaggtctgccgatgca
gccggtggcagccgcaaaggcaaaaagagcggcagccgtagcagcagcattgaaaattca
attaaaagaagaagatcaaaaaagtaa
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