Salinimicrobium tongyeongense: JRG66_11575
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Entry
JRG66_11575 CDS
T08572
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JRG66_11575 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sahn03400
]
JRG66_11575 (ligD)
Enzymes [BR:
sahn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JRG66_11575 (ligD)
DNA repair and recombination proteins [BR:
sahn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JRG66_11575 (ligD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
EFR3
Ned1_M
GMC_oxred_C
Motif
Other DBs
NCBI-ProteinID:
UZH54607
UniProt:
A0ABY6NP21
LinkDB
All DBs
Position
complement(2628869..2629687)
Genome browser
AA seq
272 aa
AA seq
DB search
MTIAGVEISKADKIIFPKKKISKGDMVSYYERIAPLMLPYLKNRPLSLQRFPNGIDSNGF
YQKSISDYFPDFIRTVKVETEEGSNTQILCNDTKTLVYLANQGTVEFHIWLSKKDRLRQP
DKVIFDLDPSDDDFEKIKQGARLLRELLKKKNIDPSLMTSGKSGLHLYSQIRRGKDFDQV
KETARKIAEEAEEQHPDLFTTQIRKDKRGSKIFVDYLRNAYAQTAVCPYSLRATEDAGVA
TPVEWRELSKIKSAAEYTIDNIFRRTGQLNKN
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgaccattgccggtgtagaaatatcaaaagctgataagatcatttttccgaagaaaaag
atcagcaaaggcgatatggtatcttattatgagagaatcgccccgctgatgctgccttac
ctgaagaacaggccgcttagcctacagcgtttcccaaacggcattgacagcaacggattt
tatcaaaagagtatttccgattattttccggattttatcaggactgttaaagttgaaacc
gaagaaggatcgaacacccagattctttgcaacgacaccaaaacccttgtttaccttgcc
aaccagggcacggtagaatttcacatctggttaagtaaaaaagacaggctgcgccaaccc
gataaggttatttttgacctggatccttccgatgatgattttgaaaagataaagcagggt
gccaggcttttgcgcgagttgctaaaaaagaagaacatagatccttcccttatgaccagc
ggaaaaagcggcttacatctatatagtcaaataaggcggggaaaagattttgaccaggtg
aaagagacggccagaaaaatagcggaagaggcagaagagcagcaccccgatctctttacc
actcaaataaggaaagataaacgaggatcaaaaatttttgtagattatcttcggaatgcg
tatgcccaaacagcagtatgcccctattctttgcgggccactgaagatgctggtgtggcg
acacctgttgaatggagggagctatcaaagatcaaaagtgctgcggaatataccattgac
aacatatttagaagaaccggacaactaaacaaaaattaa
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