Salinimicrobium tongyeongense: JRG66_11910
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Entry
JRG66_11910 CDS
T08572
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRG66_11910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sahn03019
]
JRG66_11910
Enzymes [BR:
sahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JRG66_11910
Messenger RNA biogenesis [BR:
sahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JRG66_11910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UZH54670
UniProt:
A0ABY6NP42
LinkDB
All DBs
Position
complement(2702266..2703615)
Genome browser
AA seq
449 aa
AA seq
DB search
MTFQDLKLSTPLLNALEDQNISTPTPIQEQSLPVILSGRDMVGIAQTGTGKTLAYLLPLL
KSLKYSEQKNPRILILVPTRELVVQVVEELEKLTKYINTRILGIYGGTNINTQKQLVARG
LDILVATPGRLYDLAINRDLQLKSIQKLVIDEVDVMLDLGFRFQLTNILELIPGNRQNIM
FSATMTADVKKLIEENFKNPETVSVAASGAPLENINQEGFEVPNFYTKVNLLKHLLADKE
TFHKVLIFAGNKRIADRLFQNLDPLFPEECTVIHSNKTQNYRLRSIRQFGDGFCRILVAT
DVMARGLDIEQVSHVINFDTPAYPENYIHRIGRTGRAEKEGHAILFTTPSETDDLEKIES
LMDLKISLQPLPQEIPVSTELIPEEQPKANEIYNPGKISDEDKPGPAFHEKKEKNKKVNL
GGSYRREIKKKYKKPKTRGDKNYNRKKKK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtgacttttcaggacctcaagcttagcactccgcttttaaatgcactagaagatcaaaat
atctccacccccactcctatccaggagcaatctttaccggtgatcctttcgggcagggat
atggtggggatcgcacagaccggtacgggaaagaccctggcttacctcctacctctttta
aagagcctgaaatattctgaacaaaagaacccgcgtatcctcattttagtacccacccgc
gaactggtggtgcaggtggtggaagagcttgaaaagctcaccaaatacatcaacacgcgt
attcttggaatttacggaggtaccaacatcaacacccaaaaacagctggttgcccggggg
ctggacatcctggtggctaccccgggaaggctttacgacctcgccattaaccgcgacctg
cagttaaaatctatacagaaactggtgattgatgaagtagacgtgatgctcgatttgggt
ttcaggtttcagcttaccaatattttggaattaattcccgggaaccggcaaaacattatg
ttttcggccaccatgactgccgatgttaagaaactaattgaggagaatttcaagaatccc
gaaacagtatcggtagctgccagtggcgccccactggaaaacatcaaccaggaaggattt
gaagtcccgaacttttacaccaaggtgaatcttctaaaacacctcctggccgataaagaa
acttttcacaaggtgctcatttttgccggaaataaaagaattgccgatcgcctttttcaa
aacctcgatcccctttttccagaagagtgtaccgtaatccactccaataagacccaaaat
taccggttgaggagcataaggcagtttggggacggattttgccgcatactcgtagctacc
gacgttatggcgcggggcctggatattgagcaggtaagccacgtgatcaattttgacacc
cccgcatatcccgaaaattacatacaccgcataggccgtaccggaagggcagagaaagaa
gggcatgccatacttttcaccactccttcagaaacagatgatcttgaaaagatagaatcc
ctgatggatttaaagatcagtttgcagccgctgccccaggaaattcctgtgtctacagag
ctcatcccggaggaacagcctaaagcaaatgaaatttacaatccggggaaaatttccgat
gaagataaacctgggcctgcatttcacgaaaagaaggagaagaacaaaaaggtgaacctg
ggaggctcttacagaagggaaatcaagaaaaaatacaagaaacccaagacccgcggggac
aaaaactacaacaggaaaaagaaaaaatag
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