Salinimicrobium tongyeongense: JRG66_13680
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Entry
JRG66_13680 CDS
T08572
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRG66_13680 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sahn03019
]
JRG66_13680 (rny)
Messenger RNA biogenesis [BR:
sahn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JRG66_13680 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UZH54993
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Position
3084418..3085989
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AA seq
523 aa
AA seq
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MDTLTIAITIISLVLGLAIGFGLAKFLEKKNASKIIQRAKKSAAGILKEAKQEAEGIKKD
KILQAKEKFIELKSEHEKVILSRDKKIADAEKRVRDKESQVSSELAKNKNLNRDLEEKIA
DYNHRNDVLEKKQEEIDKLHASKVQQLEVISGLSAEDARAQLVESLKDTAKADAMALVQD
TIEEAKLTAQQEAKKIIVNTIQRIGTEEAIDNCVSVFNLESDDVKGRIIGREGRNIRAIE
AATGVEIIVDDTPEAIILSCFDSVRREVARLSLHKLVTDGRIHPARIEEVVKKTTKQIEE
EIIEVGKRTVIDLGIHGLHPELIRIVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLN
AKLAKRAGLLHDIGKVPDAETEVPHAILGMQWAEKYGEKPEVCNAIGAHHDEIEMTSLLS
PIVQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFGGVKKAYAIQAGRELRVIVESE
KVSDEKAANLSFEISQKIQTDMTYPGQVKITVIRETRAVNIAK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggatacactaactatagcgatcactattatttcacttgtcctggggcttgcaattgga
tttggcctggcaaaattcctggagaagaagaacgcttccaagatcattcaaagagctaaa
aaatcggcagccgggattttaaaagaagccaaacaggaagctgaaggcattaaaaaggac
aagatccttcaggctaaagagaaatttattgaattaaagtctgaacacgaaaaggttatc
ttatcccgtgataagaaaattgccgatgccgaaaagagggtaagggataaagaatcccag
gtgtccagtgaactcgccaaaaacaagaacctgaacagggacctcgaagaaaagattgcc
gattacaaccaccgcaacgatgttcttgagaaaaagcaggaagagatagataagctgcac
gcaagcaaggtacagcaacttgaagtaatttcggggctttctgcggaagatgcccgggcg
caactcgtagaatctttaaaagatactgcaaaagccgatgccatggcccttgtgcaggat
accattgaagaagcgaagcttactgcacagcaggaggcgaaaaagatcatagtaaatacc
attcagcgtattggtaccgaagaagccatagacaactgcgtctctgttttcaacctggaa
agcgatgatgtaaaaggccggattattggtagggaagggcgaaatattcgtgccatagaa
gctgccacaggcgttgagatcattgtagatgatactcctgaagctatcatactttcatgt
tttgattcggtgagaagggaagttgcccgcctctcgcttcacaagctggtgaccgacgga
aggattcacccggcacgtattgaagaagtggtgaaaaagaccaccaaacaaatagaagaa
gagatcatagaagtaggaaaaagaaccgtgatcgaccttggaatccacggcctgcacccc
gaattgatcaggatcgtaggacgtatgaagtaccgttcttcttacggtcaaaacctgttg
caacactcaagagaggttgcgaagttatgtggtgtcatggctgcagaactgggcttaaat
gcaaaactggccaaacgcgcaggattacttcacgatattggtaaagtacccgatgcagag
accgaagtaccgcacgcgatccttggtatgcaatgggccgagaaatacggtgaaaagccc
gaagtgtgtaacgccattggtgcccaccatgacgaaattgaaatgacttcactgctatct
ccaattgtgcaggtttgtgatgccattagcggtgcgagaccgggcgcaagaagacaggtg
ctcgactcttatattcagaggttaaaagatcttgaagatatcgcctttggttttggcggc
gtgaaaaaagcctatgccattcaggccggtagggagttgagggtgattgtggaaagcgaa
aaggtgagcgatgaaaaagcagctaacctctcgttcgagatctcccaaaagatccagaca
gacatgacttatcctgggcaggtgaagattaccgtaattcgtgagacccgtgcggtgaac
atcgcaaagtag
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