Salinicoccus sp. HZC-1: ACKRAT_02455
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Entry
ACKRAT_02455 CDS
T11407
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sahz Salinicoccus sp. HZC-1
Pathway
sahz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sahz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACKRAT_02455 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sahz03019
]
ACKRAT_02455 (rnr)
03016 Transfer RNA biogenesis [BR:
sahz03016
]
ACKRAT_02455 (rnr)
Enzymes [BR:
sahz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACKRAT_02455 (rnr)
Messenger RNA biogenesis [BR:
sahz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACKRAT_02455 (rnr)
Transfer RNA biogenesis [BR:
sahz03016
]
Prokaryotic type
tRNA degradation factors
ACKRAT_02455 (rnr)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XMO21859
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Position
473853..476180
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AA seq
775 aa
AA seq
DB search
MSEYREKILEIIKSDDYKPMTMDEFQSALSAYDSEDFKEMVKGMVALEESGEVFRTKKDK
FMKTSETNLVKGKLSMHKRGFGFLRPEDKELDDVFIPPNAINGALDGDTVLVEVQQSTRS
EDSDKQEGSVSSILTRGITRVVGEYNPSKNFGFVIPDSKKIIDDIFIPKNQNLGAVDGHK
VLVELTKYREGEDKPEGHVIQILGHKNDPGVDILSIIYQHGIEIEFPEEVLKEAEQVPET
IDPSELKGRTDLRDEFTITIDGADAKDLDDAVSVKKLENGNHELTVSIADVSYYVKENSA
LDGEAYERATSVYLVDRVIPMIPHRLSNGICSLNPDEDRLTMSCRMEIDHNGKVVNHDIF
QSVIHSDRRMTYDAVNKMLVDDDRALISEFSDVYPVLQDAEALAQILRNRREARGAIDFD
FNEAQVLVNEDGSAGDIVLRTRSVGEKMIEEFMLAANETVAEHFHWMEVPFLYRVHEDPK
EEKLRQFFEFITNFGIVVKGKGNEIHPRALQEIIEEVEGRPEEMVISTLMLRSMQQARYS
EENLGHFGLSAEFYTHFTSPIRRYPDLIVHRLIRKYLIEGKTDRKTVDKNAEFLPEAAEH
TSGRERRAQDAERDTDDLKKAEYMLEHVGETFEGVISGVMNFGMFVELPNTIEGLVHVSN
MTDDHYQYHEKQLAIVGDRTGKVYRIGDPVEIEVMDVNLAEKLIDFKVVGMPERAPRQRR
DRPVEIKAKTKSEGKDGKGKGSKPDGKKHFDKGKSNKKPFYKGAKTAAKKRNGKK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatacagagaaaaaatattggaaatcatcaagtcggatgactataagccgatg
acgatggatgaattccaaagcgcgctttctgcgtatgattcggaggattttaaggaaatg
gtgaagggaatggttgcccttgaagagtccggagaagtattcagaacgaagaaagacaag
tttatgaaaacaagcgaaacgaatcttgtaaaagggaagctttccatgcataagcgcgga
tttggattccttcgtcccgaagacaaagaacttgatgatgttttcattccgccgaatgcg
atcaacggtgccctggacggcgatactgtcttagtcgaagtacagcaatcgacaaggagt
gaggacagcgacaaacaggaaggttctgtttccagtatcctgacacgcggcataacgcgt
gttgtcggtgaatacaatccaagcaaaaacttcggtttcgttattccggattccaagaaa
ataatcgatgatatttttatccctaaaaatcagaatctcggtgcggtggatggacacaaa
gtgcttgtggaacttaccaaataccgtgaaggggaagataaaccggaaggccatgtcatt
cagattctcgggcataaaaacgatccgggtgtcgatattctttccattatatatcagcat
ggtatcgagatcgagttccctgaagaagtgctgaaagaggccgagcaggtaccggagaca
attgatccatccgagctgaaagggcgtacggatctgcgcgatgagttcacgattacgatc
gatggtgcagatgcaaaagaccttgatgatgcggtgtcagtgaaaaagctggagaatggc
aaccatgagctcacagtcagcattgctgatgtaagctattacgtcaaggaaaattctgct
ctggatggcgaagcgtatgagcgtgcaacgagtgtgtatcttgtggaccgtgtcattcca
atgattccgcaccgtctgtccaacggtatatgctcacttaatccggatgaagaccgttta
acgatgagctgccggatggaaatcgaccataacggaaaagtcgtaaaccatgatattttc
caaagtgtcattcattccgaccgcagaatgacatacgatgcggtgaataaaatgctggtg
gatgacgatcgggcattaatcagcgaattcagcgatgtgtatccagtgctgcaggacgcg
gaagcactcgcccagattctcagaaacaggagagaagcccgcggcgcgattgacttcgac
ttcaacgaagcacaggtactggtcaatgaagacggctcagctggcgacatcgttctgaga
acacgttcggtcggagaaaaaatgattgaggagtttatgctggctgcgaatgaaacagtc
gctgaacatttccactggatggaagtgccattcctgtaccgtgtccacgaagatccgaag
gaagagaaactcagacagttctttgaattcatcacgaatttcggaatcgttgtgaaaggt
aaagggaatgagatccatccgagggcactgcaggaaattatcgaagaagtggaaggcaga
ccggaggagatggtcatcagcacactgatgctccgttccatgcagcaggcgcgttattct
gaagagaaccttggacacttcggattatcagcagagttttacacacacttcacatcaccg
atcagacgttatcctgacctgattgtccaccgcctgatcagaaaatatctgattgaagga
aaaacggacaggaagacggttgataaaaatgctgaattcctgccggaggcagcagaacac
acatctggcagggaacgtcgtgcacaggatgcagaacgtgacacggatgatctgaaaaaa
gcggaatacatgcttgagcatgtgggtgaaacatttgaaggtgtcatatccggcgtgatg
aactttggcatgttcgtagaactgccaaatacgattgaaggacttgtccacgtatcgaac
atgacggatgaccactaccagtatcacgaaaagcagcttgcgattgtcggagaccgcacg
ggcaaagtataccgtatcggtgatcctgtggaaattgaagtcatggatgtcaatctggct
gaaaaactcattgatttcaaagtagtgggcatgccggaacgtgcaccaagacaaagacgc
gaccgtccggtggaaataaaagccaaaaccaaatccgaaggcaaagatggaaaaggcaaa
ggctctaaacccgatgggaaaaagcattttgataaagggaagagtaataaaaagccattt
tacaaaggtgcgaagaccgcggcaaaaaaacgcaatggaaagaagtaa
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