Salinicoccus sp. HZC-1: ACKRAT_04700
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Entry
ACKRAT_04700 CDS
T11407
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sahz Salinicoccus sp. HZC-1
Pathway
sahz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sahz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACKRAT_04700 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sahz03019
]
ACKRAT_04700 (rnjA)
Messenger RNA biogenesis [BR:
sahz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACKRAT_04700 (rnjA)
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NCBI-ProteinID:
XMO22281
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Position
complement(939269..940966)
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AA seq
565 aa
AA seq
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MTLEKGEVGVFALGGLGEIGKNTYCVEYKDEIIVIDAGIKFPDDEQLGIDYVIPDYTYLK
ENQDRISALIITHGHEDHIGGIPFLLKEMNVPIYSGPLALGLIRNKLEEHHLLRTAELNP
IEEDTVLKFKHMSIEFYLTTHSIPEAYGVVVKTPEGNIVHTGDFKFDFTPVGEPANIAKM
AQLGEEGVLCLLSDSTNATVPNFTISEKAVGQNVEDIFRKCTGRIIFATFASNIYRVQQA
IDAAVKLDRKICIFGRSMENNIRIGTELGYIKAPPETFIEPKMINKIEKHKVMILCTGSQ
GEPMAALSRIANGTHRQISIIPDDTVVFSSSPIPGNTLSVNRTINALYKAGADVIHGKLS
NIHTSGHGSQEEQKLMLRLMRPKYFMPIHGEYRMLHLHKELAVNTGIDPENVFLMEIGDV
LALKKDSARHSHRVPAGTVFVDGIGIGDIGNIVLRDRKDLSEEGLAIVVVSIDFKTGELL
SGPDIISRGFVYMRESYGLIRSAEKKIKGDVINLLNTKNDAEWYHVKQLIIEELSNHLYR
KTRRRPMILPMIMRVNQDAETTQKQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgactcttgaaaaaggtgaagtaggtgtattcgccctcgggggactcggggaaatcgga
aaaaacacttactgcgtggagtataaggatgaaatcatagtgatagatgcagggattaaa
tttcccgatgacgaacagcttggcattgactatgtcatcccggattacacgtatctgaaa
gagaatcaggaccggatcagtgcacttattattacccacggtcatgaggaccatatcggc
ggaattccatttttactaaaagaaatgaatgtacccatttattccggaccgcttgcgctc
ggtttaatccgcaataaactggaggaacaccatctcctccgcacagcagaactgaatccg
atcgaagaagatacagtactgaaattcaaacacatgtcaattgagttttatctcaccacg
cattcgattccggaagcatacggtgtcgttgtaaaaacaccggaaggcaacattgttcat
acaggtgacttcaaatttgactttacaccggtcggtgagccggcaaatattgccaagatg
gcccagcttggtgaagaaggtgtgctctgcctcctctccgattctacaaatgcgacggtg
cctaactttactatcagtgaaaaagctgtcggtcagaatgtagaagatattttcagaaaa
tgtacagggagaatcattttcgcaacctttgcatctaatatttaccgtgtccagcaggct
atagatgcagcggtcaagcttgaccgtaaaatctgcattttcggcagaagcatggaaaac
aatatccgcatcggtaccgaactcggctatattaaagcgccgccggaaacattcattgaa
ccgaagatgatcaacaaaattgaaaagcataaagtgatgattctctgtaccggttcccag
ggtgagccgatggctgccctctccagaatcgcaaatgggacacaccgtcagatcagcata
atcccggatgacactgtagttttcagttcgtcaccaatccctggtaacacgctcagcgtc
aaccgtactatcaatgcattgtacaaagcaggagcagacgtaatccatggaaaactgtcc
aacattcatacttcaggacatggatcccaggaagaacaaaaacttatgctgagactgatg
agaccaaagtacttcatgccaattcacggtgaataccgcatgcttcatctgcataaagaa
ctcgccgtcaatacaggtattgatcctgaaaatgttttccttatggaaatcggcgacgtg
cttgcacttaaaaaagacagtgcgagacattcacaccgtgttccggccgggacagtattt
gttgatggtataggcattggagatatcggtaacatcgtgctccgcgacagaaaagatctt
tctgaagaaggacttgcgattgtcgttgtttccatcgactttaaaaccggcgaactgtta
agtggaccggatatcatttcacgcggttttgtttatatgagagagtcatatgggctgatc
cgcagtgccgaaaagaagatcaaaggcgatgtcatcaatcttttaaatactaaaaatgat
gctgaatggtatcacgtgaagcagcttatcattgaagaactcagcaaccatctctacaga
aaaacacgcagaagaccgatgattctgccgatgatcatgagagtcaatcaggatgctgaa
accacacaaaaacaataa
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