Salinicoccus sp. HZC-1: ACKRAT_06235
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Entry
ACKRAT_06235 CDS
T11407
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sahz Salinicoccus sp. HZC-1
Pathway
sahz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sahz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACKRAT_06235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sahz03400
]
ACKRAT_06235
Enzymes [BR:
sahz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACKRAT_06235
DNA repair and recombination proteins [BR:
sahz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACKRAT_06235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
nSTAND3
AAA_12
HHH
UvrD_C
WHD_MCM3_C
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA
AAA_28
RsgA_GTPase
NB-ARC
NPHP3_N
AAA_23
Motif
Other DBs
NCBI-ProteinID:
XMO22573
LinkDB
All DBs
Position
1252709..1255078
Genome browser
AA seq
789 aa
AA seq
DB search
MEQSTIYDDIYIIGEVERVIFMSEQTRFAVLKVNISETNTHFNDEAIVTGYFHAVAEGDS
YRFSGKITNHARYGEQFSADSFKKELPNTVRGVIQYLSGDTFPGIGEKTAKKIVDALGVD
ALEKISDDASVLRDVGGLPKSKIEMIHRTILENRQTEQSVIKLTELGFGPRMSAKILKIY
QDDTMNIIEKEPYRLVMDIEGVGFATADKIALSSGITMDDPGRLKAGIMYVMEATVMGDG
HTYIKMEQLIELTDELLSKNGVRHFNDEEITNAVETLADRDQLIQYSGRIYIPSLFYSEY
KSSEQIYRLINDRTDISISEEKAGDMVAEVGEHFDIAYNTKQKEAIISALTKKISIITGG
PGTGKTTIVKGIINAYHRLHKLKDYDEYESDEYPIRLIAPTGRASKRLSETAGIGASTIH
RLIGWGMDTGKDEIIDAEIDAELIIIDEMSMVDTWLFYQFMRNVKPYTILVFVGDRDQLP
SVGPGTVFKDLISSDVVPVTELDTIYRQGEGSSIIRLAHQIKTGERMNITEKFSDRLFIP
ARINQIPDLIENVVDKAVGKGYDMRDIQVLAPIYRGNAGISKLNQILQTILNPEEEDKNQ
IEFGDVIFREGDKVIQLVNRGEDNVFNGDSGIIESILFKDQDEAEKDTIMVDFDGIHIAY
ERKELTELSHAYCTSIHKAQGSEYPIVIMPVVKSYRHMLMKNIVYTGITRAKESLIICGD
SEAFYDSLEREGIERNTSLEEMIHSLFGISEEKEDVPNAPEGEALLTEENMMEIPAMINM
GEVSPYDFN
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggaacagtcaacaatttatgatgatatctatatcataggagaagtggagcgcgtcata
ttcatgagtgaacagacgcgttttgccgtcctgaaagtgaatatcagtgagacgaacacc
catttcaatgacgaagccattgtgacggggtattttcatgccgtggcggaaggggactcg
taccgcttctccggtaaaataaccaaccatgcgagatacggggaacagttcagtgcagat
tcgtttaaaaaggagcttcccaacactgtaaggggcgtcattcaatatttatccggcgat
acatttcccggcatcggcgagaagacggcaaaaaaaatcgtggatgccctcggtgtggac
gccctggaaaagatttcggatgatgcttctgttctgagagatgtcggcggactgccgaaa
agcaaaattgaaatgatccacaggacgattctggaaaacagacagaccgagcagtcggtg
atcaaactgacggaactcggttttggtcccagaatgagcgccaagatcttaaagatctac
caggatgatacgatgaacatcattgaaaaagaaccctacagactggtgatggatatcgaa
ggcgtcggatttgcgactgcagacaaaattgcgttgtcctccggcatcaccatggatgat
cccggccgcctgaaagcaggaatcatgtatgtgatggaagcgacagtgatgggtgacggc
cacacttatatcaaaatggagcagctgatcgaactgacggatgagctgctctccaaaaac
ggtgtgcggcatttcaatgatgaggaaattacgaatgcggtggaaactctggccgaccgg
gaccagctgatccagtattccggccggatctatatcccttcattgttctactctgaatat
aaatcttccgagcagatctaccgcctgatcaatgacaggactgatatttcgatcagtgag
gaaaaagctggcgacatggtggctgaagtcggcgaacactttgatatcgcctacaacacg
aagcagaaggaagcgatcatttctgcattgaccaaaaagatatcgataattacaggcggg
ccggggacaggcaagacgacgatcgtcaaaggaatcataaatgcctaccaccgcctgcat
aagctcaaggattatgacgagtatgaatcagatgagtacccgatccggctgattgcaccc
accgggcgtgcttccaagcgcctgagtgaaactgcgggcataggtgcttcgacgatccac
aggctgatcggatggggcatggatacaggcaaggacgaaatcatcgatgcagagattgat
gcggaactgatcatcatcgatgaaatgtcgatggtcgacacatggttgttctatcagttc
atgagaaacgtcaaaccttatacgatcctggtgtttgtgggagaccgggatcagctgcct
tctgtcgggccggggacagtgttcaaagacttgatttcttcggatgtcgttccggtcacg
gaactcgataccatctaccggcagggagaaggttcatcaatcatcagacttgcccatcaa
ataaaaaccggcgaacggatgaacattacggaaaaattcagcgaccgcctgtttattccg
gcacgtatcaaccaaatcccggatctgattgaaaatgtggtggataaagcagttggcaaa
ggttacgacatgcgggatatccaggttctcgcgcccatatacaggggcaatgccggtatt
tcgaagctcaaccagatactgcagacgatattgaatcctgaagaggaagataaaaatcaa
atagaattcggtgatgtcattttccgtgaaggcgataaagtcatccagctcgtcaaccga
ggagaagacaatgtcttcaatggtgactcgggaatcatcgaatccatattgttcaaagat
caggatgaagcggaaaaagataccatcatggtggattttgacggcattcatattgcctat
gaacggaaagaacttacagagctgtcccatgcctactgcaccagcatccataaggcacag
ggcagcgaatatccgatcgtcatcatgccggtcgttaaaagctaccgtcatatgctgatg
aagaatatcgtctataccggaattacacgtgccaaggaatcactgatcatctgcggtgat
tcagaagccttctatgactcactggaacgtgaaggaatagagcggaatacatcactcgaa
gaaatgatccattctcttttcggcatcagtgaagagaaagaggatgtcccgaatgcccct
gaaggtgaagccctactgacagaagaaaacatgatggaaatcccggcaatgatcaatatg
ggcgaagtctcgccctatgatttcaattga
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