Sulfolobus acidocaldarius DSM 639: Saci_1317
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Entry
Saci_1317 CDS
T00251
Name
(GenBank) universally conserved protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sai
Sulfolobus acidocaldarius DSM 639
Brite
KEGG Orthology (KO) [BR:
sai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sai03016
]
Saci_1317
Enzymes [BR:
sai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Saci_1317
Transfer RNA biogenesis [BR:
sai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Saci_1317
Prokaryotic type
tRNA splicing ligases
Saci_1317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAY80653
UniProt:
Q4J977
LinkDB
All DBs
Position
complement(1121472..1122920)
Genome browser
AA seq
482 aa
AA seq
DB search
MQTQIKRIGNYEWRIEKGAQECMKVPVTVFADDVLIDKMKQDLTLRQATNVSCLQGVQES
VYVLPDGHQGYGFPIGGIAASAIDEEGVVSPGGIGYDINCGVRLLRTNLDYKDVKDKLKD
LVEEIYRNVPSGVGSEGRVKLSYQQLDNVLSEGVKWAVDNGYGWNRDMEHIEQSGSWNLA
DPSKVSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDEKVAKAIGITHEGQITVMVHTGS
RGLGHQVASDYLQVMERAMKKYNIKVPDRELAAIPFNTREAQDYIHAMSSAANFAWTNRQ
MITHWARESFGRVYRIDPEKLDLNIVYDVAHNIAKIEEYDIDGKRKKVLVHRKGATRAFP
PGSTEIPADHRNVGQIVLIPGSMGTASYIMAGIPEGRRTWFTAPHGAGRWMSREAAVRSY
PVNSVVQNLEEKGIIVRAATKRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVARLKPIGVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagactcagattaagagaattggcaattatgagtggcgtattgaaaagggagcccag
gaatgtatgaaagtaccagttacagttttcgcggatgatgtgcttatcgataaaatgaaa
caggacttgacattaaggcaagctactaatgtatcctgcttacagggagtgcaagagtca
gtatatgtactccctgatggtcatcagggatatggttttccaataggcggaatagcagct
agtgcaattgacgaggaaggtgtagtaagtccaggaggaataggatatgatataaactgt
ggtgtaagactgctgagaactaatcttgattataaggatgttaaagataagcttaaggat
ttggttgaggagatctacagaaacgtaccaagtggagtgggaagtgaaggaagagtaaaa
ttatcgtatcaacaacttgacaatgtattaagtgagggggtaaaatgggctgttgataat
ggatatggatggaatagagacatggagcatatagagcagagtggcagttggaatttagca
gatccatctaaggtaagtcctatagcaaaacagaggggtcatacacaattaggtacatta
ggagcaggcaaccatttccttgaaattcaggttgttgataagatatatgatgaaaaggta
gctaaagctataggcataacccatgaaggacagataacagtaatggttcatacgggatcc
agaggattaggtcatcaagtagctagtgattacttacaagttatggaaagagcaatgaag
aagtacaacataaaagttcctgatagggaacttgcagctataccatttaacactagagag
gctcaagattatatacacgcaatgtcgtctgcagcaaacttcgcatggaccaataggcaa
atgataacacattgggccagagaaagttttggcagagtgtatagaatagacccagaaaaa
ttagatcttaatatagtatatgatgtagcccataatatagcaaaaatagaggaatacgat
atagacggaaagagaaagaaagttttagtacaccgaaagggagcaacaagagcttttcca
ccaggaagtactgagattcctgcagatcataggaacgtaggtcagatagtcctcatacca
ggaagcatggggacagcaagttatataatggcaggaattccggagggtagaagaacatgg
ttcactgcaccacatggtgcaggaagatggatgtcaagagaagccgcggtcagaagttat
ccagttaattcagtagttcaaaacctagaggagaagggtattattgtgagagcggctact
aaaagagtagtagcggaggaggcaccaggtgcatataaagatgttgatagagtagcgaaa
gttgctcatgaagttaagatagctaaattggttgcaagattaaaacccataggtgtgact
aagggttga
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