Salinarchaeum sp. IM2453: K0C01_01365
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Entry
K0C01_01365 CDS
T07444
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
saim
Salinarchaeum sp. IM2453
Pathway
saim03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
saim00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
K0C01_01365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saim03021
]
K0C01_01365
Transcription machinery [BR:
saim03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
K0C01_01365
Prokaryotic type
Archaeal type
TFB
K0C01_01365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Trm112p
DUF5795
DUF7129
HTH_Tnp_ISL3
DZR
Zn_ribbon_RPB9
A2L_zn_ribbon
DUF8054_C
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
QZA88845
LinkDB
All DBs
Position
285588..286547
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AA seq
319 aa
AA seq
DB search
MNERIQQFNQEQEESESTDADVACPECGGTVINDEEHGESVCSECGLVVETDEIDHGPEW
RAFNAKEKDEKSRVGAPTTNTMHDKGLSTNIDWRDKDAYGNALGSRQREKMQRLRKWNER
FRTRDSKERNLKQALGEIDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTSC
VYAAARQAGVPRSLDEIADVSRVEKHEIARTYRYVVRELGLEVKPADPESYVPRFASDLE
LSDEAEHRARMLLQNAKDKGIHSGKSPVGLAAAAVYAASLLTNEKTTQAEVSEVADISEV
TIRNRYHELLEAEETINAI
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacgcatacagcaattcaaccaagaacaagaggaatcggaatcaacagacgca
gatgttgcctgtccggaatgtggtgggacagtcatcaatgacgaagagcacggagagtct
gtctgttcagagtgtgggctcgtcgtcgaaaccgacgagatcgatcacgggccggaatgg
cgcgcatttaatgccaaggaaaaagatgagaaatcgcgtgtcggagcaccaacaacaaac
acgatgcatgataagggcctgtcaacaaatattgactggcgagataaagacgcatacggg
aacgcattaggatcccggcaacgggagaaaatgcaacggctccgaaaatggaacgagcga
ttccgtacccgtgactcaaaagagcgtaacctcaaacaggcactcggcgaaatcgatcga
atggcatctgcacttggtctccccgataatgttcgtgaaacagccagtgttatttatcga
cgtgcacttgaagaagatctcttgccaggccgatcaatcgagggagtgtcaacgtcgtgc
gtgtatgctgccgcgcgacaggctggtgtaccacgaagccttgatgagattgcggatgtc
agtcgtgtagagaaacatgagattgccagaacataccgctatgttgtccgagaactcgga
ctagaagtgaagccagctgatccagaaagctatgttccacgatttgcgtctgaccttgaa
ctttcagacgaagcagaacaccgggcccggatgctgctacaaaacgcgaaggacaaaggg
attcacagcggcaagtcaccagtcggactggctgccgcggcagtgtatgcggcctcactt
ctaacaaacgagaaaacaacacaggcagaagtaagcgaggttgccgacatttcagaggta
acaatcaggaatcgatatcacgagttgcttgaagcagaagaaacgattaacgctatctag
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