Spiractinospora alimapuensis: J4H86_02590
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Entry
J4H86_02590 CDS
T07850
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
saiu
Spiractinospora alimapuensis
Pathway
saiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4H86_02590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saiu03019
]
J4H86_02590
03009 Ribosome biogenesis [BR:
saiu03009
]
J4H86_02590
Enzymes [BR:
saiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4H86_02590
Messenger RNA biogenesis [BR:
saiu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4H86_02590
Ribosome biogenesis [BR:
saiu03009
]
Prokaryotic type
rRNA helicases
J4H86_02590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
CreS_N
WSD
DUF6892
Motif
Other DBs
NCBI-ProteinID:
QVQ52735
LinkDB
All DBs
Position
complement(562895..564634)
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AA seq
579 aa
AA seq
DB search
MSLATAEARNGFDALPLRPELLDAVAELGYDEPTPIQRAAIPPLVDGHDLLGQAATGTGK
TAAFALPVLERVRTDQTDRAPIALILVPTRELAVQVSQAVDDYGKSLGVRVLPVYGGTPI
GRQLRSLERGVDVVVATPGRALDHLRRGSLHLNSLQITVLDEADEMLDMGFTEDIEAILE
ETPDGVQTVLFSATMPARIEDIANRHLTNPQRIMIEPEKRDPGEAPRVRQTAYVVPRGYK
PAVLGRLLDVEAPAAAIVFCRTREEVDRLTEVATARGHRAEQLHGGMSQEQRDRVMDRLR
SGAARLLVATDVAARGLDIDHLTHVINYSVPRAPESYVHRIGRVGRAGREGVAISLMEPR
EHRLLKTVRHVTGFAIPVEQVPSVSELQALRAARLRDALAQRMSSTVDTPEDLREVARAL
GEEHDLVDVAATALRMAQEAATGGAPDEEIPEASLKPPKDTRGRRGERGERGERGGGPRG
ERRSSGAPAAGQTRLFIGVGRSSRIRPQDLVGAIAGEAGLNGRDIGAIDIADRFSLVEVP
SGAADHVISSLQGTTIKGRKPTVRRDSRASGGGGRRERR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcactggccaccgccgaagcccgtaacggcttcgacgcccttcccctacgcccagaa
cttctcgacgccgtggccgagctcggctacgacgagcccaccccgatccaacgcgccgcg
attcccccgctcgtcgacggccacgaccttctcggtcaggccgcgaccggcaccggcaag
accgcggcgttcgcactgcccgtcctggagcgggttcgcaccgaccagacggaccgcgcg
ccaatagccctgatcctcgtgcccacccgggaactcgcggtccaggtctcccaggccgtc
gacgactacggcaagtccctcggcgtacgcgtactgccggtctacgggggcaccccgatc
ggccgtcagctacgcagcctggagcgtggggtcgacgtcgtcgtcgccacccccggtcgc
gcgctggaccacctgcgtcgcggcagcctccacctcaactcgctgcagatcacggtgctc
gacgaggccgacgagatgctcgacatgggcttcaccgaggacatcgaggcgattctcgag
gagacaccggacggcgtgcagaccgtcctgttctccgcgaccatgccggcgcggatcgag
gacatcgccaaccggcacctgaccaacccgcagcggatcatgatcgagccggagaagcgc
gacccgggggaagctccccgggtgcgccagaccgcctacgtggttcctcggggctacaag
ccggccgttctgggccggctgctcgacgtcgaggcgcccgccgccgccatcgtgttctgc
cgcacccgcgaagaggtggaccggctgaccgaggtcgccacggcccgtggccaccgcgcc
gagcaactgcacggcgggatgagccaggagcagcgggaccgggtcatggaccggttgcgt
tcgggcgccgcgcggttgctggtcgccaccgacgtggcggcgcgcgggctggacatcgac
cacctgacccacgtgatcaactacagcgttccgcgtgccccggagtcctacgtccaccgc
atcgggcgagtggggcgtgcggggcgtgagggcgtggccatctcgctgatggagccgcgc
gaacaccggctgctgaagacggtccgccacgtcaccgggttcgcgatcccggtggagcag
gtccccagtgtcagcgaactccaggccctgcgcgcggcccgtcttcgtgacgccctcgca
cagcggatgtcctcgaccgtggacacgcccgaggacctgcgcgaggtcgcccgcgccctg
ggcgaggaacacgacctcgtcgacgtggccgcgaccgccctgcggatggcccaggaggcc
gcgacgggtggcgcgccggacgaggagattcctgaggcgtcgctgaagccgccgaaggac
acccgtggacgtcgcggggagcgtggcgaacgcggcgagcgcggcggcgggccacgtggg
gagcgccgctcgtcgggcgccccggccgcgggacagacccggttgttcatcggtgtcggc
cgttcctcccggatccgtccgcaggacctcgtgggcgccatcgccggtgaggccggcctc
aacggtcgcgacatcggtgcgatcgacatcgctgaccggttctccctggtcgaggtgccc
agtggggccgccgaccacgtgatcagctcgctccagggcacgacgatcaagggtcgcaag
ccgaccgtgcgtcgtgactcgcgcgcgtcgggcggcggaggccgacgcgaacgccggtaa
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