Spiractinospora alimapuensis: J4H86_04160
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Entry
J4H86_04160 CDS
T07850
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
saiu
Spiractinospora alimapuensis
Brite
KEGG Orthology (KO) [BR:
saiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
saiu03016
]
J4H86_04160
Enzymes [BR:
saiu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J4H86_04160
Transfer RNA biogenesis [BR:
saiu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J4H86_04160
Prokaryotic type
tRNA splicing ligases
J4H86_04160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QVQ53009
LinkDB
All DBs
Position
890771..891955
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AA seq
394 aa
AA seq
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MFSEVSGARTPIRMWADPATVDPGAMRQLRNVSAVPWIHGLAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMTAVRTSLTAEDLPEDMRSLRSALEKAVPVGFNAHDTPVDPRR
IHGLRTAGWTEFWDRFDTLAPTVLRRRDRAEKQIGTLGGGNHFLEVCLDDDGRVWVVLHS
GSRNIGKELAEYHISQARDLPHNQDLPDRDLAVFVAGTPEMDAYRRDLYWAQEYARRNRD
VMMGLACTVLRDGFPGVTFPEWITCHHNYVAEETYDGVDVLVTRKGAIRAGSGDLGIIPG
SMATGTYIVRGLGNPRSFNSASHGAGRVMSRSRAKKTFTQDDLISQTSGVECRKDVGVLD
EIPGAYKDISAVIDAQRDLVEVVAHLRQVICVKG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgttctccgaggtgtccggagcgcgaaccccgatccggatgtgggccgacccggccacg
gtggatcccggcgcgatgcggcaactgcgcaacgtgtccgcggtgccatggatccacggg
ctcgccgtgatgccggacgtccactacggcaagggcgccaccgtcggttcggtgatcgcc
atgcgcgacgccgtgtcccccgccgccgtgggtgtggacatcggctgcgggatgaccgcg
gtccggacctccctcaccgccgaggacctgccggaggacatgcggtcccttcgctccgcg
ctggagaaggcggtcccggtcgggttcaacgcccacgacacaccggtcgacccgcgacgg
atccacggcctcaggaccgccgggtggaccgagttctgggaccggttcgacacgctcgcg
cccacggtgctgcggcgacgggaccgggcggagaagcagatcgggacgctgggtggtggg
aaccacttcctcgaggtctgcctggacgacgacggtcgcgtctgggtggtcctgcactcg
gggtcgcgcaacatcggcaaggagctcgccgagtaccacatcagccaggcccgcgacctg
ccgcacaaccaggatctgcccgaccgtgacctcgcggtgttcgtcgccgggaccccggag
atggacgcctaccggcgtgacctctactgggcacaggagtacgcgcgccggaaccgcgac
gtgatgatggggctggcgtgcaccgtgcttcgggacggcttcccgggcgtcaccttcccg
gagtggatcacctgccaccacaactacgtggcggaggagacctacgacggagtggacgtt
ctggtcacccgaaaaggggcgattcgtgcgggatccggtgatctcgggatcattccgggc
tcgatggcgaccggcacctacatcgtccggggactcggcaacccgcggtcgttcaactcg
gcatcgcacggggcggggcgagtgatgagccggtcccgagccaagaagaccttcacccag
gacgacctgatcagtcagaccagcggggtggagtgtcgaaaggacgtcggcgtcctcgac
gagatccccggcgcgtacaaggacatctccgcggtgatcgacgcacagcgtgacctcgtg
gaggtcgtcgcgcacctacgccaggtgatctgcgtcaagggctga
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