Spiractinospora alimapuensis: J4H86_08000
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Entry
J4H86_08000 CDS
T07850
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
saiu
Spiractinospora alimapuensis
Pathway
saiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4H86_08000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saiu03019
]
J4H86_08000
03016 Transfer RNA biogenesis [BR:
saiu03016
]
J4H86_08000
Enzymes [BR:
saiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J4H86_08000
Messenger RNA biogenesis [BR:
saiu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J4H86_08000
Transfer RNA biogenesis [BR:
saiu03016
]
Prokaryotic type
tRNA degradation factors
J4H86_08000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
KH_1
S1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QVQ53655
LinkDB
All DBs
Position
complement(1748344..1750674)
Genome browser
AA seq
776 aa
AA seq
DB search
MEGAYSSRAVIDNGSFGTRTIRFETGRLAQLAAGSAAAYLDDETMVLSATTASKRPKDQL
DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPMRPSFADGLRNEIQIV
ETVMALHPEHLYDVVAINAASLSTQLAGLPFSGPIGGVRVALIQGQWVAFPTHSELADAT
FDMVIAGRVLEDGDVAIMMVEAESTANTLGLVADGAVGPNEQTVAEGLEAAKPFIKVLCD
AQMELANQAAKETGEFPRFLDYNDDAFEAVEAACKDELSAALTIADKANREDELERIKTN
TAQKLAEDFEGRDKEISAAFRSLQKKLMRQRITSEGVRIDGRGTKDIRRLVAEVGVLPRV
HGSALFERGETQVLGVTTLNMLRMEQMVDTLNPDKTKRYMHNYNMPPYSTGETGRVGSPK
RREIGHGALAERALVPVLPGREEFPYAIRQVSEAIASNGSTSMASVCASTMSLMHSGVPL
KDMVAGIAMGLIKEGEEFVTLTDILGTEDAFGDMDFKVAGTRDLITALQLDTKLDGIPAS
VLASALQQARGARLAILDVMQEAISTPSEMNATAPRVLTVKIPVDKIGEVIGPKGKMINQ
IQEDTGADITIEDDGTIYIGATDGPSAEAARDTINGIANPTMPEVGDRYLGTVVKIASFG
TFISLLPGKDGLLHISQIRKLHGGKRIENLEDVMSIGEKVQVEIKEIDDRGKLSLVPVEV
VEAEAAANEGAEQDDEDAEGAASESGDAGDKDGDSSGGERRRRRSRTRSRGRDENT
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgcgtattcatcccgagccgtgattgacaacggcagtttcggtacccgcacg
atccggttcgagaccggacggctggcgcagctcgccgcgggctccgccgccgcctacctc
gacgacgagaccatggtcctgtcggcgacgacggcgtccaagcggccgaaggaccagctc
gacttcttcccgctcaccgtcgacgtcgaggagcggatgtacgccgcggggcgtatcccc
ggctccttcttccggcgggagggacgtccctccgaggacgccatcctcacctgtcggctc
atcgaccggccgatgcgtccctcgttcgccgacggtctgcgcaacgagatccagatcgtc
gagacggtcatggcgttgcaccccgagcacctgtacgacgtggtcgcgatcaacgccgcg
tcgctgtccacccagctcgccgggctgccgttctccggcccgatcggtggtgtccgggtc
gcgctgatccaggggcagtgggtcgcgttccccacgcactccgaactcgccgacgccacc
ttcgacatggtgatcgccggtcgcgtcctggaggacggcgacgtcgcgatcatgatggtc
gaggccgagtccaccgccaacacgctcggcctggtcgccgacggggccgtcggccccaac
gagcagaccgtggccgagggcctcgaggcggcgaagccgttcatcaaggtcctgtgtgac
gcgcagatggagctggcgaaccaggccgccaaggagaccggggagttcccccgtttcctc
gactacaacgacgacgccttcgaggccgtcgaggcggcctgcaaggacgagctgtccgcg
gcgctcaccatcgccgacaaggccaaccgcgaggacgaactggagcggatcaagaccaac
accgcccagaagctcgccgaggacttcgagggtcgggacaaggagatcagcgccgcgttc
cgctcgctgcagaagaagctgatgcgccagcgcatcaccagcgagggcgtgcgcatcgac
ggccgcggcaccaaggacatccgccgcctcgtcgccgaggtcggggtgcttccccgcgtg
cacggttccgcgctgttcgagcgtggggagacccaggtcctcggggtgaccactctgaac
atgctgcgcatggagcagatggtcgacacgctcaaccccgacaagaccaagcgctacatg
cacaactacaacatgccgccgtactccaccggggagaccggtcgggtcggctcgcccaag
cggcgcgagatcgggcacggcgccctcgctgagcgggccctggtgcccgtgctgccgggg
cgcgaggagttcccctacgcgatccgccaggtctccgaggccatcgcctccaacggctcc
acgtcgatggcgtcggtgtgtgcctcaacgatgtcgctcatgcactccggcgttccgctg
aaggacatggtggcgggcatcgccatgggcctcatcaaggagggcgaggagttcgtcacc
ctgaccgacatcctcggcaccgaggacgcgttcggcgacatggacttcaaggtcgctggc
acgcgggacctgatcaccgcgctgcagctcgacaccaagctggacggtattccggcctcg
gtgctcgcgagtgccctgcagcaggcccggggcgcgcgcctggcgatcctggacgtgatg
caggaggccatctcgaccccgagcgagatgaacgcgaccgccccgcgcgtgctgacggtg
aagatcccggtggacaagatcggtgaggtcatcggccccaagggcaagatgatcaaccag
atccaggaggacaccggcgccgacatcaccatcgaggacgacggcaccatctacatcggt
gcgacggacgggccctcggcggaggccgcgcgcgacaccatcaacgggatcgccaacccg
accatgccggaggtgggggaccgctacctcggcaccgtcgtcaagatcgcgtccttcgga
acgttcatctccctgcttcccggcaaggacggactcctgcacatctcgcagatccgcaag
ctccacggtgggaagcggatcgagaacctcgaggacgtcatgtccatcggggagaaggtc
caggtcgagatcaaggagatcgacgaccgaggcaagctgtccctggtcccggtcgaggtc
gtggaggcggaggccgccgcgaacgagggagccgagcaggacgacgaggacgccgagggc
gccgcgtcggagtccggtgacgctggggacaaggacggcgactcctcgggcggggagcgc
cgtcggcgccgtagccgcacccggagccgcggccgcgacgagaacacctga
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