Spiractinospora alimapuensis: J4H86_17580
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Entry
J4H86_17580 CDS
T07850
Name
(GenBank) HAMP domain-containing protein
Organism
saiu
Spiractinospora alimapuensis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAMP_2
HAMP
HATPase_c
Response_reg
GAF_2
HisKA
GAF
Laminin_II
ApoLp-III
ATG17_like
RNase_Y_N
PIN-TPR-GreABC
OmpH
FAA_hydro_N_2
DUF3450
RIMB1_N
Motif
Other DBs
NCBI-ProteinID:
QVQ54985
LinkDB
All DBs
Position
3794500..3798618
Genome browser
AA seq
1372 aa
AA seq
DB search
MRDGDFSVRLEPAAEGTQAEIATVLNQVLDNWQHLSDELQRVSGAVCTEGRLHEQVSVEQ
TRGAWGRNVRAINRILEQVNEPVSSVAEVLDAVADGDLEQRVDLNSRTGPLHGDLLRLAS
SVNRMADQMSGFTGEVTRVAREVGTEGKLGGRARVEGVSGAWRDVTEAVNGMAGRLTDQV
RDISRVTTAVAEGDLTRKVIVDVQGEMLSLKNTVNTMVDQLDSFADEVTRVAREVGTEGK
LGGRANVKGVSGIWKDLTNNVNSMADNLTDQVRDIAQVTTAVARGDLTRKVTVDVQGEML
SLKNTVNTMVDQLDSFADEVTRVAREVGTEGKLGGRANVKGASGIWKDLTDNVNSMANSL
TTQVRNISQVTTAVARGDLTKKITVDAHGEILEVKDTVNTMVDQLSAFADEVTRVAREVG
TEGQLGGQATVPGVSGVWKGLTDNVNSMADNLTRQVRQISVVTTAAARGDLTKKITVDAR
GEILELKETINTMVDQLSAFAAEVTRVAREVGTEGQLGGRANVMGVSGIWKDLTENVNSM
SHNLTTQVRNISQVTTAVARGDLTKKITVDAHGEILEVKDTVNTMVDQLSAFADEVTRVA
REVGSEGQLGGQARVEGVSGTWKQLTDRVNELAGNLTTQVRAIGDVASAVTRGDLTQSIT
VEARGELSKLRDNINLMVSNLRASTNAQQDEDWLKSHLARISGMVQGHRDLHELARLIMS
EVTPLVEAQYGACYLLDGDGEESYRLYAGYGYRPKKSQRRITPGDGLAGQVIAQRQELLL
HQVPGDYVRIESGVGDSPPLSLAIFPIVSEGRVLGALELASFTEFRPIHLNFLRQLVDLI
GATISSILANVRTEYLLAQSQQLATELQERTNELQRQQEELREKNTELHAQAGQLANRNR
AIELQNRQIERARQSLEERARQLHASYKYKSEFLANMSHELRTPLNSLLILARLLADNPE
GNLTSKQVEFSRTIHKAGTDLLQQIDGILDLSKVEAGRMEVNPGEVSIPQLVEYVEASFR
ALANEKGLAFTIEVSREIPQELWTDEQRLKQVVRNLLSNALKFTSSGEVRLRIHPASELA
DMDVAASVPSDEAVAFSVVDTGPGIPPEQLQLIFEAFHQGDGGTSRRFGGTGLGLSISRN
LARLLGGEVSVASTVATGSTFTLVLPVHLPDELAEQDGERTGEAVAVDAEFPTTGLLSES
LLPSSGEVPDTPLTGPTPQLKSEPSTMIASASTASPERDGVLRGKRVLIVDDDIRNVFAL
TSALEAHGLRVLYAENGATGIAKLEANDDIALVLMDIMMPELDGDETTRRIREMPQFADL
PIITLTAKAMRGDRERSLEHGASDYVTKPINLDHLLDVMRAWLDPSWDAEQN
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacggcgacttcagcgttcggctggagcccgccgcggagggcacgcaggcggag
atcgcgacggtgttgaaccaggtgctggacaactggcagcacctcagcgacgagctgcaa
cgcgtcagcggagccgtctgtaccgagggccgcctgcacgagcaggtctcggtggagcag
acgcgcggcgcgtggggccgcaacgtgcgtgcgatcaaccggatcctggagcaggtcaac
gaaccggtgtcctccgtcgcggaggttctggacgcggtggccgacggcgacctggagcaa
cgggtcgacctgaacagccggaccggtcccctgcacggtgacctcctccggctcgcgagc
tccgtgaaccggatggcggaccagatgtcagggttcaccggcgaggtgacccgcgtggcc
cgtgaagtgggtaccgagggcaagttgggcgggcgggcccgcgtggagggcgtctccggc
gcgtggcgcgacgtgaccgaagcggtcaacggtatggccggacggctcaccgaccaggta
cgcgacatctcccgcgtcaccacggcggtggccgagggtgacctgacccgtaaggtcatc
gtcgacgttcagggcgagatgttgtcgctgaagaacaccgtgaacacgatggtggaccag
ctcgactccttcgccgacgaggtcacccgcgtggcccgtgaagtgggtaccgagggcaag
ctgggcgggcgcgccaacgtcaagggcgtgtcgggcatctggaaggacctgacgaacaac
gtcaactccatggccgacaacctcaccgaccaagtgcgggatatcgcacaggtgacgacc
gcggtcgccaggggcgacctgacccgcaaggtcacggtggacgttcagggcgagatgttg
tcgctgaagaacaccgtgaacacgatggtggaccagctcgactccttcgccgacgaggtc
acccgggtcgcccgcgaggtgggtaccgagggcaagctcggtggccgcgccaacgtcaag
ggcgcgtcgggcatctggaaggacctcaccgacaacgtcaactccatggcgaacagtctc
accacgcaggtgcgcaacatctcgcaggtgacgaccgctgtcgcccgcggtgacctgacg
aagaagatcaccgttgacgcgcacggcgagatcctggaagtgaaggacaccgtgaacacg
atggtggaccagttgtcggcgttcgccgacgaggtcacccgggtggcgcgggaagtgggt
accgagggccagctcggcggccaggcgacggtgccgggcgtgtcgggtgtctggaagggc
ctcaccgacaacgtcaactccatggccgacaacctgacccgccaggtgcgccagatctcc
gtggtcaccaccgcggcggcgcgcggcgacctcaccaagaagatcacggtcgacgcacgg
ggcgagatcctggagctcaaggagaccatcaacacgatggtcgaccagctctccgcattc
gcggccgaggtcacgcgcgtcgcgcgtgaggtgggtaccgaaggccagctcggtggccgg
gcgaacgtgatgggcgtctcggggatctggaaggacctcaccgagaacgtcaactcgatg
tcgcacaacctcaccacgcaggtgcgcaacatctcgcaggtgacgacggccgtcgctcgg
ggtgacctgacgaagaagatcacggtggacgcccacggtgagatcctggaagtgaaggac
accgtgaacacgatggtggaccagttgtcggcgttcgccgacgaggtcacccgggtggca
cgggaggtcggcagcgaggggcagctcggtggccaggcacgggtcgagggcgtctcgggc
acgtggaagcagttgacggaccgggtgaacgagctcgccggcaacctgacgacccaggtg
cgggcgatcggcgacgtggccagcgccgtcacccggggcgacctcacccagtcgatcacg
gtcgaggcgcgcggcgagctgagcaagctccgcgacaacatcaacctgatggtctccaac
ctgcgggcgtcgaccaacgcccagcaggacgaggactggctgaagagccacctcgcccgg
atctccgggatggtccaggggcatcgcgacctccacgaactcgcgcgcctcatcatgagc
gaggtgacgccgctggtggaggcccagtacggcgcctgctacctgctggacggcgacggt
gaggagtcctaccggctctacgccggctacggctaccggcccaagaagtcgcagcgccgg
atcactccgggcgacggtctcgccgggcaggtcatcgcgcagcgccaggagctgctactg
caccaggtccccggtgactacgtgcggatcgagtccggggtcggggactcgccgccgctg
agcctcgcgatcttcccgatcgtctccgaggggcgtgtgttgggcgcgctggagctggcg
tcgttcacggagttccgccccatccacctgaacttcctgcgtcagctcgtcgacctcatc
ggggcgacgatcagcagcatcctcgccaatgtgcgcaccgagtacctgctggcacagtcg
cagcagctcgcgacggagctgcaggaacgcaccaacgagctgcagcgccagcaggaggag
ctgcgggagaagaacaccgagctgcacgcgcaggccggccagctcgccaaccgcaaccgc
gccatcgaactgcagaaccggcagatcgaacgcgcccgacagtcgttggaggaacgggcc
cggcagttgcacgcctcctacaagtacaagtccgagttcctggccaacatgtcccacgag
ctgcggaccccgctgaacagcctgttgatcctcgcccgcctgctcgcggacaacccggag
ggcaacctcacctccaagcaggtcgagttctcccgcaccatccacaaggcggggacggat
ctcctgcaacagatcgacggcatcctcgacctctccaaggtcgaggcggggcgcatggag
gtgaaccccggcgaggtctcgattccacaactcgtggagtacgtggaggcgtcgttccga
gcgctggcgaacgagaagggcctcgccttcacgatcgaggtctcccgggagatcccacag
gaactgtggacggacgagcagcgcctgaagcaggtcgtgcgcaacctcctgtccaacgcg
ctgaagttcacctccagcggcgaggtccgactgcggatccacccagcgtcggagctggcg
gacatggacgtcgccgcctccgtgccgagcgacgaggcggtggccttctccgtggtggac
acgggaccggggattccaccggagcagctccagctcatcttcgaggcgttccaccagggc
gacggcggcacgtcgcgtcgcttcggcgggacgggattggggctgtccatcagtcgcaac
ctcgcacggctgctcggcggtgaggtgagcgtcgcgtcgacggtcgcgaccggcagcacg
ttcaccctggtcctgcccgtgcacctgccggacgagctcgccgagcaggatggggagcga
acaggagaggctgtcgcggtcgacgccgagttcccgacgacgggactgctgagcgagtcg
ctgctcccgtcgtcgggcgaggtgcccgacaccccgctgaccggacccacgccgcagctc
aagagcgaaccaagcacgatgatcgcctcggcgagtacggcctctccggagcgcgacggt
gtgctgcggggcaaacgcgtgctcatcgtcgacgacgacatccgcaacgtcttcgccctg
accagcgcactggaggcgcacggcctgcgggtgctctacgcggagaacggcgccacggga
atcgccaagctggaggccaacgacgacatcgcgctcgtgctcatggacatcatgatgccg
gagctcgacggcgacgagaccacgcggcggatccgggaaatgccgcagttcgctgacctg
ccgatcatcacgctcacggcgaaggcgatgcggggcgatcgagagcgtagccttgagcac
ggggcgtcggactacgtcacaaagcccatcaacctggatcatctgctcgacgtgatgcga
gcgtggttggatccgtcgtgggacgccgaacagaactag
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