Spiractinospora alimapuensis: J4H86_25290
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Entry
J4H86_25290 CDS
T07850
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
saiu
Spiractinospora alimapuensis
Pathway
saiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4H86_25290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saiu03019
]
J4H86_25290
03400 DNA repair and recombination proteins [BR:
saiu03400
]
J4H86_25290
Enzymes [BR:
saiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4H86_25290
Messenger RNA biogenesis [BR:
saiu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4H86_25290
DNA repair and recombination proteins [BR:
saiu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J4H86_25290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
QVQ52008
LinkDB
All DBs
Position
5464546..5466684
Genome browser
AA seq
712 aa
AA seq
DB search
MDATVDCGQTDEQVRAEAEEWLRALAGPDASLREDQWTAIRALVVDRRRALVVQRTGWGK
SAVYFVATALLRRAGAGPSVIVSPLLALMRDQIAAAERAGLTARTVNSANTADWDAVYAE
IAAGAVDVVLVSPERLNNPEFRERVLPDLSVACGLVVVDEAHCVSDWGHDFRPDYMRIRT
LLADLPARTPVLATTATANARVTADVAAQVGVGESRDTVVLRGPLDRTSLRLAVVDLPDA
TRRLGWLATHLRDLPGSGIIYTLTVAAAEETTDFLVGQGYDVRAYTGQTDPEERRRAEDD
LRENAVKALVATSALGMGFDKPDLGFVLHLGAPQSPIAYYQQVGRAGRGVRRAEVVLLPG
REDRAIWAHFTERAFPPAETVATTLDVLRAAAEPVSLPRLEPRVNLGRSRLEQMLRILDV
EGAVRRVRGGWVATDAPWEYDAERYAGVTAARRAEQDAMVRYLAHSGCRMEFLRRELDDA
EAGPCGRCDNCTGAHWRADTDSTAMEAAARHLSRAGVVVPPRRQWPTGMAQLGVSLSGRI
AAEHSAAEGRAVARFTDLGWGTRLRALLGETASDTSVDAEVFAAVVSVLADWGWRTRPVG
VVAVPSHARPRLVSDLARRIATVGRLPYLGSLAYQDTHRPGARRHNSAQRLASVCQSLRL
GDEIPDALRDTSSGPLLLVDDYTESGWTLTTATALLRGAGAPEVLPLVLATS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaccgtggactgtggacagaccgacgaacaggttcgggccgaggcggaggag
tggctgcgtgctctggccggtccggacgcgtcgctgagggaggaccagtggaccgcgatc
agggcgctggtcgtcgaccgcaggcgggccctcgtcgtccaacggacggggtggggcaag
tccgcggtctacttcgtggcgaccgcgctgctgcgtcgtgccggggccggccccagcgtg
atcgtctccccgctgttggcgctgatgcgggaccagatcgccgccgccgaacgggccgga
ctgacggcgcggaccgtcaacagcgccaacacggcggactgggacgcggtctacgcggag
atcgccgccggcgccgtcgacgtcgtgctcgtgagcccggaacggttgaacaaccccgag
ttccgggagcgggtgctgccggacctctccgtcgcctgcggtctggtcgtcgtggacgag
gcgcactgcgtgtcggactggggacacgacttccggcccgactacatgcgcatccgcacc
ctgctcgccgacctcccggcccggaccccggtcctggcgacgacggccaccgccaacgcc
cgggtgaccgccgacgtcgccgcgcaggtcggcgtgggggagtcgcgggacaccgtcgtg
ctgcgcgggccgctggaccgcaccagcctgcggctcgccgtggtcgacctgcccgacgcc
acgcgtcgcctcggctggttggccacacacctccgtgacctcccgggatcgggcatcatc
tacaccctgaccgtcgccgcggcggaggagacgaccgacttcctcgtcggccagggctac
gacgtgcgcgcctacacgggccagaccgaccccgaggagcggcggcgggccgaggacgac
ctacgcgagaacgcggtcaaggccctggtggcgacgagcgcgctcggcatgggcttcgac
aagcccgacctcggtttcgtgctccacttgggtgctccccagtccccgatcgcctactac
cagcaggtggggcgtgccgggcgcggggttcgccgcgccgaggtcgtgctgctgccggga
cgcgaggaccgggccatctgggcccacttcaccgagcgcgccttcccgccggccgagacc
gtcgcgacgacactcgacgtgcttcgcgccgcggccgagccggtctccctgccgcgcctg
gagccacgggtgaacctcggccgctcccgcctggagcagatgctgcggatcctcgacgtg
gaaggggcggtgcgccgggtccgtggcggctgggtcgcgaccgacgccccgtgggagtac
gacgccgagcgctacgcgggcgtgaccgccgctcgacgggccgagcaggacgccatggtg
cgctacctggcgcactccgggtgccggatggagttcctccgccgcgaactcgacgacgcc
gaggcgggcccctgtggccgctgcgacaactgcaccggcgcgcactggcgtgccgacacc
gactccacggcgatggaggcggcggcgcgtcacctgagccgggccggtgtcgtggtgccg
ccccgacgccagtggcccaccgggatggcccagctcggggtctcactctccgggcggatc
gccgccgagcactccgccgcggaaggacgggcggtggcccggttcaccgacctcggctgg
gggacgcggctgcgcgccctgctcggagaaacggcgagcgacacctcggtcgacgccgaa
gtgttcgccgcagtggtgagcgtcctcgcggactggggatggcgcacccgccccgtcggc
gtcgtcgcggttccctcgcacgcccgtccgcgcctggtcagtgacctggcgcggcggatc
gccaccgtcggccggctgccctacctcggcagtctcgcctaccaggacacccaccgcccc
ggagcccgccgccacaacagcgcccaacggttggcgtcggtgtgtcagtccctgcgcttg
ggcgacgagatccccgacgccctgcgcgacacctccagcggcccgctgctcctcgtcgac
gactacaccgagtccggctggaccctcaccaccgcgaccgccctcctgcgcggggccggc
gcccccgaggtgctcccactcgtgctggccacgagctag
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