Salinicola sp. JS01: QO259_04915
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Entry
QO259_04915 CDS
T09138
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sajs
Salinicola sp. JS01
Pathway
sajs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sajs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QO259_04915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sajs03019
]
QO259_04915
03009 Ribosome biogenesis [BR:
sajs03009
]
QO259_04915
Enzymes [BR:
sajs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QO259_04915
Messenger RNA biogenesis [BR:
sajs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QO259_04915
Ribosome biogenesis [BR:
sajs03009
]
Prokaryotic type
rRNA helicases
QO259_04915
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
HvfC_C
Motif
Other DBs
NCBI-ProteinID:
WIX34015
LinkDB
All DBs
Position
1092328..1094043
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AA seq
571 aa
AA seq
DB search
MTSTVVATPSFGDLALLPEVLSALDTLGYETPSPIQSQTIPALLDGRDVLGQAQTGTGKT
AAFALPLLSRLELERREPQVLVLAPTRELAQQVAVSFSKYGQNLKGLEIATLCGGQEYRE
QLSALKRGAQVVVGTPGRIIDHLDRGSLKLEGLSALVLDEADEMLRMGFIDDVKRVVADA
PSDSQRVFFSATLPSEIERIVNRYLVDPVKVAIESKVSTGENIEQRVVRVEGPSKLEALA
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRAKVD
VLVATDVAARGLDVPRITHVINYDLPQDSEAYIHRIGRTGRAGRDGVAITFAGGRETRKV
RWVEQATGQPMTEMPLPDESAIRAHRDDRFSARLLEMLEAGAGQQRELIEKLVAEGHDPV
DLAAAMATLARAGEAPIGRITAGPARRDNPRDGGRDAGRERGPRRRDSAPREGMTRYRVS
VGHKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAG
RSLEIAEDQGAPERAPRRRNDGDAPMRRSRA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgactgtagttgcgacgccaagctttggcgatctggcgctattgccggaagta
ctctctgccctcgataccctgggctacgaaacaccctccccgatccagtcgcagaccatc
cctgcactgctggacggtcgcgacgtgctgggccaggcccagaccggcaccggcaagacc
gctgccttcgccctgccgctcttgagccgactcgagctcgagcggcgtgaacctcaggtg
ctggtactggcaccgacccgcgagctggcccagcaggtggccgtctcgttttccaagtac
ggtcagaatctgaaagggctcgagatcgccaccctgtgcggcggtcaggagtaccgtgag
cagctgagcgcgctcaagcgcggcgctcaggtagtggtcggcaccccgggccggatcatc
gatcacctggatcgtggcagcctcaagctggaagggctctccgccctggtgctcgacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcaagcgcgtggtcgccgatgcg
cccagcgactcgcagcgggtgttcttctcggccaccctgccgagcgagatcgagcgtatc
gtcaaccgctatctggtcgatccggtcaaggtggcgatcgaatccaaggtcagcaccggc
gagaacatcgagcagcgtgtggttcgggtcgaaggcccaagcaagctcgaagcgctggcg
cgtatcctcgaagtcgagccggtcgatgccgcgatcgtcttcgtgcgcacccgtgccgcc
tgcaccacgctggtcgagcagctcaccgcgcgtggcgtcaacgccgccggcctctccggt
gacctcgaccagagcctgcgtgagcgcaccatcactcggctcaagcgtgccaaggtcgac
gtgctggtggccaccgacgtggccgcacgcggcctcgacgtgccgcgtatcacccacgtg
atcaactacgatctgccgcaggactcggaagcctacatccaccgtatcgggcgtaccggc
cgtgccggccgtgacggcgtggcgatcaccttcgccggcggccgcgagacgcgcaaggtg
cgctgggtcgagcaggccaccggccagccgatgaccgagatgccgctgcccgacgagagc
gccatccgcgcccatcgcgacgaccgcttcagtgcgcgtctgctcgagatgctcgaagcc
ggtgccggccagcagcgtgagctgatcgagaagctggtcgcagagggtcacgaccccgtc
gatctggccgccgccatggcgaccctggcacgcgccggtgaagccccgatcgggcgtatc
accgcaggccctgcgcgccgcgacaacccgcgtgacggtggccgcgatgccggccgcgag
cgtggcccgcgtcgccgcgacagcgccccgcgtgaaggcatgacccgctaccgcgtctcg
gtcggccacaaggatggcgtcaagcccggccagctggttggtgcgctggccaacgaaggc
ggtatcgaaggcgcccgtatcggtcgtatcgacatccgcaacgccttctcggtggtcgag
ctgcccagcggtctgcccagcaccatcctggccaagatggcacgcgctcgggtcgccggc
cgctcgctggagatcgccgaagatcagggcgcaccggaacgtgcaccgcgccgccgtaac
gacggcgatgcgccgatgcgccgctcgcgcgcctga
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